Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1423 ATGGCATCAGGCTCTTATCAGGACAATTTATTGGCAAGATCTGATGTTTATTTACTTCCATATACTGGTTTCTGTAGTGATGTCAGTTCGAATAACATAGTGGGCGAAATACCATTCGGTTTACCCCCCAATGTCACACATATGAATCTAAGCCACAATTTACTACATGGACCCGTTGGTGATGTATTTACTGGTTTAGATAATCTCAAAGAAATGGACctttcatacaataatttctcagGAGATCTGCCGTGTTCATTTGGTTCCTTAAGAAACCTTGCTAGATTGTTCCTGCATAATAACAGATTCACTGGATCAGTCACTTACTTAGCTGAACTTCCACTAACAGATTTGAACATTCAAGATAATCTGTTTAGTGGCATTCTTCCACAGCACTTTCAATCCATACCAAATTTATGGATTGGAGAGAATAAATTCCATGTGGCAGACAACTCTGCTCCCTGGACTTTTCCTCTGGATACTGTATCAGTTGAGCATAACACTAGTAGCCCGCCCACAACTCGGGCAAATGCCATAAAGAATTATTCTCCTCCCAGAGTAAGTGAGGCTCCTCCCAGAGTTATTGAGGCTCATCCCATAGTAATTGAGGCTCCTCCCAGATTAAGTAAGCACAAGAAGAAACGTATAGGTCCTGGAGGAATAGCATTTATGATTGGTGGAGGAACACTGATGGCTACAGGGGTGGCCCTCTTTATTGCAATCCGTTTGAATAAACTTCACGTAGAGAGCCCTAACTCGAAGAGCTTGGAAAGCAACCATCGCTCATTGCATTCTCATCCGACCAGTGCAACCATAGGGGTCTCTTCTACCGCACTAGATGAGAGCCCACAAATCCCCCCCTTTAATTCTGCATCATTTTTGAGCCCTGTGGGATTGCCTTCCCTGAACCATAGCAATACGGCGGAACCATCAAGAAGAAGTTCTTCCAAAAGAGGCAGATCCACTGGAAGGACGAAAATTTACACAGTAGCGGAGCTTCAGTTGGCTACTAATTGCTTCAATTTAGGCAACCTTCTGGGAGAAGGATCTCTTGGCCCTGTTTATAGAGCTAAATTTCCAGATGGCAAAATTTTGGCTGTGAAGAAGATAAACATGGCGGGTCTGTCTTTCAGAGAAGAGGAAAAGTTCTTGGATGTCATTTGCACGGTTTCACGACTGAAGCACCCCAACATCGTAGCACTCAACGGTTACTGTTTGGAGCACGGCATGCATCTTCTTGTTTACGATTACGTTGGAAATTTCACTCTAAACGATGCTCTTCACAGTGAGGCATACAAACCTTTGTCGTGGGTCCACCGTCTCCGGATTGCTCTAGGTGTTGCTCAGGCTCTGGACTATTTGCACTCAACGTTCTGCCCTCCCGTGGCACACGGCAACTTGAAGGCTGCCAATGTTCTACTGGATGAAAATTTGATGCCTCGTGTTTGTGACTGTAGCTTGGCTATTTTGAGACTGCTGAGTATCAATCAAGTCGAAATTTCGGCTACTGAGATTGATATTGGAGAGATAGGCTACGTTGCACCAGATCATGTCCAACCAGGAACCAGCAGCAGAAAGAGAGACATATTTGCCTTTGGGGTATTGCTTCTGGAACTGTTAACGGGAAGGAAACCTTTCGATGGAGCCAAGCCAAAGGAGGAGCAACGTCTGGTGAAATGGGCTCCACCCATGCTTCCTTATAGAGCGAGTTTGGAACAGATGGTGGATCCCCGTATGAAAAGAACATTTTCATCCAAGGCTCTTTCTCGTTATGCTGATATCATCTCCCTCTGTATACAGCCTGTAAGGCAACTCCGTTCTCCAATGTCCGAAATTGTGGAGTCTCTTGAATCTTTATACCAAAAGTTCAACATTGAAAAGAGCGATGCAGCAGATGGTACTGAACTCGATCCATTTGAGAAATCTTTACATTCAACCGACATATGCTTTATGGGTTCTCCCGCCGCAGTAAGCCATGCATCAGCCTGA 1989 0.4409 MASGSYQDNLLARSDVYLLPYTGFCSDVSSNNIVGEIPFGLPPNVTHMNLSHNLLHGPVGDVFTGLDNLKEMDLSYNNFSGDLPCSFGSLRNLARLFLHNNRFTGSVTYLAELPLTDLNIQDNLFSGILPQHFQSIPNLWIGENKFHVADNSAPWTFPLDTVSVEHNTSSPPTTRANAIKNYSPPRVSEAPPRVIEAHPIVIEAPPRLSKHKKKRIGPGGIAFMIGGGTLMATGVALFIAIRLNKLHVESPNSKSLESNHRSLHSHPTSATIGVSSTALDESPQIPPFNSASFLSPVGLPSLNHSNTAEPSRRSSSKRGRSTGRTKIYTVAELQLATNCFNLGNLLGEGSLGPVYRAKFPDGKILAVKKINMAGLSFREEEKFLDVICTVSRLKHPNIVALNGYCLEHGMHLLVYDYVGNFTLNDALHSEAYKPLSWVHRLRIALGVAQALDYLHSTFCPPVAHGNLKAANVLLDENLMPRVCDCSLAILRLLSINQVEISATEIDIGEIGYVAPDHVQPGTSSRKRDIFAFGVLLLELLTGRKPFDGAKPKEEQRLVKWAPPMLPYRASLEQMVDPRMKRTFSSKALSRYADIISLCIQPVRQLRSPMSEIVESLESLYQKFNIEKSDAADGTELDPFEKSLHSTDICFMGSPAAVSHASA 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1423 662 Gene3D Ribonuclease Inhibitor 22 181 IPR032675 -
Ssu4g1423 662 MobiDBLite consensus disorder prediction 302 323 - -
Ssu4g1423 662 PANTHER OS01G0253100 PROTEIN 13 662 IPR045271 GO:0004714|GO:0006468
Ssu4g1423 662 Pfam Protein kinase domain 342 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1423 662 Gene3D Phosphorylase Kinase; domain 1 303 417 - -
Ssu4g1423 662 PANTHER STRUBBELIG-RECEPTOR FAMILY PROTEIN 13 662 - -
Ssu4g1423 662 MobiDBLite consensus disorder prediction 166 181 - -
Ssu4g1423 662 Gene3D Transferase(Phosphotransferase) domain 1 419 639 - -
Ssu4g1423 662 SUPERFAMILY L domain-like 27 146 - -
Ssu4g1423 662 Pfam Leucine rich repeat 43 103 IPR001611 GO:0005515
Ssu4g1423 662 ProSiteProfiles Protein kinase domain profile. 340 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1423 662 MobiDBLite consensus disorder prediction 166 190 - -
Ssu4g1423 662 MobiDBLite consensus disorder prediction 252 280 - -
Ssu4g1423 662 SUPERFAMILY Protein kinase-like (PK-like) 315 617 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1423 Ssu-Chr4 23693238 23697925 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1423 27 654 Strubbelig Receptor Gene Family AT5G06820 51.286 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Ssu4g1423 Pkinase 8.4e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1423 - - gmx:100775254 1072.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1423 4 23693238 23697925 Ssu4g1423 4 23693238 23697925 ECH