Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1422 ATGGGTTCAGCCTCTTCGCCGCCCAACTCCTCTTCTGAGTCCCTCAACGGCTTGAAATTCGGCcaaaaaatctattttgagGATGTGGGTCACGCTACTTCAGCCACCTCTCTTACTTCTGCTGCTGCTatcacttcttcttcttcttcttcctcttcctcaagGAAAGGAAGAGGTGGGTGTGTTCAACCAGCTCAACCTCCTAGGTGTCAAGTTGAAGGGTGTAAAGTAGATCTGAGTGATGCAAAAGCTTACTATTCTAGACATAAAGTTTGTGGCATGCACTCTAAATCCCCCACTGTCATTGTTGCTGGCCTTCAACAAAGGTTTTGTCAACAGTGTAGCAGATTTCATCAGCTTCCTGAGTTTGATCAAGGAAAAAGAAGTTGCCGCAGGCGACTAGCTGGCCATAATGAGCGTAGGAGAAAGCCCCCACCCAGCTCCCTCTTAACCTCTCGTTATACCAGACTTTCTTCATCTGCTTTTGATAATAGTGGCAGAGGTGGCAACTTTCTGATGGAATTGGCTTCATACCCAAAGCTTAGTCTGAGAAATTCACTTCCAACTCCTAGATCATCCGAGATAACTCCTGGAAATCAAACCTCAACACTTAGCTGGCAGGGCAACTCAGAGACACCATCTGACCTTTTTATGCAAGGTTCCGTGGGTGGGACAAGCTTTGCTGGTCCCGGACATCCTCCAGGGGAAAGTTACACTGGGGTCACTGACTCGAGCTGTGCTCTCTCTCTTCTGTCAAGTCAAACATGGGGTTCTAGAAACACAGCACCAAGTCTTGGGTTGAATAACATGATAAATTTCAATGGGACACCCATGACACAACTTGCTGCATCATCTCATGGTGCATCAATCCATCAACTTCCAAATACCTCGTGGTGTTTCAAGGGCATTGATACCAGTAACTGTTCACCCGAGGTTGTCCCTGATCTAGGTCTGGGTCAAATTTCACAGCCTCTTAATAGCCAACTTCCTGGTGAGCTTGATCTGTCCCAACAGGGCAGGAGGCATTATATGGATCTAGAGCAGTCCAGGGCCTATGAATCTACTCATTGGTCACTTTAA 1080 0.4509 MGSASSPPNSSSESLNGLKFGQKIYFEDVGHATSATSLTSAAAITSSSSSSSSSRKGRGGCVQPAQPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPTVIVAGLQQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPSSLLTSRYTRLSSSAFDNSGRGGNFLMELASYPKLSLRNSLPTPRSSEITPGNQTSTLSWQGNSETPSDLFMQGSVGGTSFAGPGHPPGESYTGVTDSSCALSLLSSQTWGSRNTAPSLGLNNMINFNGTPMTQLAASSHGASIHQLPNTSWCFKGIDTSNCSPEVVPDLGLGQISQPLNSQLPGELDLSQQGRRHYMDLEQSRAYESTHWSL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1422 359 MobiDBLite consensus disorder prediction 183 209 - -
Ssu4g1422 359 Gene3D - 60 131 IPR036893 GO:0003677|GO:0005634
Ssu4g1422 359 MobiDBLite consensus disorder prediction 45 59 - -
Ssu4g1422 359 MobiDBLite consensus disorder prediction 133 155 - -
Ssu4g1422 359 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 4 359 IPR044817 GO:0003677
Ssu4g1422 359 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 4 359 - -
Ssu4g1422 359 ProSiteProfiles Zinc finger SBP-type profile. 67 144 IPR004333 GO:0003677
Ssu4g1422 359 SUPERFAMILY SBT domain 68 149 IPR036893 GO:0003677|GO:0005634
Ssu4g1422 359 MobiDBLite consensus disorder prediction 45 67 - -
Ssu4g1422 359 Pfam SBP domain 70 143 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1422 Ssu-Chr4 23683263 23687242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1422 18 359 SBP-box Gene Family AT2G42200 45.699 2.84e-73 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ssu4g1422 SBP 9.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1422 - - gmx:100807165 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1422 4 23683263 23687242 Ssu7g2759 7 56759144 56764345 PCT