Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1420 ATGTTCCACTTTCGAAAACTCGATGTTGTTCGCTTCATTCTTAAACCCTGGCAAAACCCTAGATTCCAGAGCACGAAGAGAGCCCCCGAATCAGCGGCGAGAAGCACCGTGAAAGAAGCCCAAGCCGCATTGCTGGAGTACCTCCACTCCACGCGAAGCCTTCAGTTCTTAGACGCCGACAACATGTGCAGAAACTCACCCTTCTTCCTCCACGACCTCCTCGCCAAAACCCAATCCCAACCCCAAACCCGCCACGTGGACACGAAACGCTCCGTCTCACGCTACCTCCGCTACCACCCCATCAACGAGTTCGAACCCTTCTTCGAGAGCGCGGGTCTCACCCCTCCCGAGTTCGCGCCCCTCCTCCCGCGCGACATGATTTACCTGAACGACGACGTTTTGCTGATGGAGAATTACCACACGCTCTGCAACTACGGCGTTCCCCGCACCGAGATGGGGAAGGTTTTCAAGCTAGCGCCTCAGGTGTTTCGGTATAAGCCTGGGGTTTTGATCTCGAAGCTTCGCGATTACGAAAAGCTTGGTGTTGGACCGAGTACGTTGGTGAGCGTGGTTGCTTCTAGCCCCTGCATTTTGGTTGGGGATAGCGACCTTGATTTTGTGAAGGTTGTGGAGAAATTGAAGGGTATTGTTGGAAAGGATGGTGAATGGATAGGGGGGAATTTGTTGAATAGGGGTTGTTGTAATTGGGGTCTCTTGCTTCATGTTTTGTGTTTGCTTGCTAGGGTTTACAGTGAGGAACAGTTGGGTGATTTGATCGTTCGTCACCCTTGTGTTGTTTTTGAGGAGTCTGGAGGTAGTGTGTTGTCCCTGATTGTATTCTTGTTCAAATTTGGATTGTCTGTGAACCAGATTTCTCTCATGTTTCTCGAGTTTCCGCAGATTCGGGTCGACAAGTTCTTGTCCAACTTGAGGCAGTGTTTTCTGTTCTTGACTGAGATTGAGATGCAGGCTGAAGAGATTGGGGAGATTTTCCGGTGTCACTGCTTGGTGTTGGGTTCCTTCACTCCGAAGAAAACAATTACTTTGATTACTAACTTGAATGTTGGCAAGAAGCGGCTGTGTAGAGTTGTGAGGGATAATCCTCTACTGATGAGGAATTGGGCTTTGGGAAGGAGGATTGAGCCTTTGGGGAACTCATATTTGGAGTATGAATCGAAGGCGATGAAGAAGAAGTTCATGCTGAGGTTGGGGTATGTGGAGAACTcgaaaaaaatgaatgagacAATTAGGTTGTTCAGAGGTAAGGGAGCTGAGCTTCAGGAGAGActtgattttattgttaaagCTGGGTTGGATTATGAGGATGTCTGTAAGATGATTCGAAATTCCCCTCGGATTCTTAGTCAGACCACGGATAGGATCAACATGAAACTTGAGTGTCTTGTGAGTGAAGGATATTCTATATCAGATTTAGTGAATTTCccttcctttctttccttttcaccTCGAAGGGTTAAGCTTAGGTTTTCAATGTATAATTGGCTCAAAGAGCGTGGAGCTGTAGAAGAGGGGCGTGCTTTGAGCACTTTAATTGCATGCTCCGACAAAGCCTTTGAGCAGCTGTATGTGAAGCGCCATCCTTCTGGCCTTCAAGTTTGGCAGGATTTAAAGTCACAAATTCCTTCTGAGGTTTAG 1656 0.4638 MFHFRKLDVVRFILKPWQNPRFQSTKRAPESAARSTVKEAQAALLEYLHSTRSLQFLDADNMCRNSPFFLHDLLAKTQSQPQTRHVDTKRSVSRYLRYHPINEFEPFFESAGLTPPEFAPLLPRDMIYLNDDVLLMENYHTLCNYGVPRTEMGKVFKLAPQVFRYKPGVLISKLRDYEKLGVGPSTLVSVVASSPCILVGDSDLDFVKVVEKLKGIVGKDGEWIGGNLLNRGCCNWGLLLHVLCLLARVYSEEQLGDLIVRHPCVVFEESGGSVLSLIVFLFKFGLSVNQISLMFLEFPQIRVDKFLSNLRQCFLFLTEIEMQAEEIGEIFRCHCLVLGSFTPKKTITLITNLNVGKKRLCRVVRDNPLLMRNWALGRRIEPLGNSYLEYESKAMKKKFMLRLGYVENSKKMNETIRLFRGKGAELQERLDFIVKAGLDYEDVCKMIRNSPRILSQTTDRINMKLECLVSEGYSISDLVNFPSFLSFSPRRVKLRFSMYNWLKERGAVEEGRALSTLIACSDKAFEQLYVKRHPSGLQVWQDLKSQIPSEV 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1420 551 SMART mt_12 292 323 IPR003690 GO:0003690|GO:0006355
Ssu4g1420 551 SMART mt_12 475 508 IPR003690 GO:0003690|GO:0006355
Ssu4g1420 551 SMART mt_12 444 474 IPR003690 GO:0003690|GO:0006355
Ssu4g1420 551 SMART mt_12 153 183 IPR003690 GO:0003690|GO:0006355
Ssu4g1420 551 Gene3D Transcription termination factor 3, mitochondrial 82 222 IPR038538 -
Ssu4g1420 551 Gene3D Transcription termination factor 3, mitochondrial 274 543 IPR038538 -
Ssu4g1420 551 Pfam mTERF 410 526 IPR003690 GO:0003690|GO:0006355
Ssu4g1420 551 Pfam mTERF 251 370 IPR003690 GO:0003690|GO:0006355
Ssu4g1420 551 PANTHER CGI-12 PROTEIN-RELATED 23 544 IPR003690 GO:0003690|GO:0006355
Ssu4g1420 551 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 23 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1420 Ssu-Chr4 23662489 23664144 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ssu4g1420 mTERF 1.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1420 - - gmx:100807690 879.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1420 4 23662489 23664144 Ssu4g1420 4 23662489 23664144 ECH