Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1419 ATGGAGGATTTGAAGAAGAGAAAGCTGGACGAAGCGGGCAACGGTGATTTTGCTTCCAAGGAAGAGCTTCGCTTCCTCATTGAACCTCTAGCTAAACCCCAGCTCGTCGATCTTCTGGCGAAACTAGGGTCCCAATATCCTTCAATTgcagaagaaataaaaagtattgCAAGTGCAGATCCTGCCCATCGAAAGCTTTTTGTCCGTGGCTTGGCATGGAATACCACTTCAGAAACTTTGCGTGCTgCCTTTCAAGAGCATGGAGAAATTGAGGAAGGAGCTGTGATCCATGATAAAGCGACAGGAAAATCCCGTGGCTATGGATTTATCACTTACAAAAATATGGAATCAACTCAGCAAGCATTGAGAGCCCCTAGCAAGTTAATCGATGGAAGATTGGCTGTGTGTAATCTAGCTTGTGAGGGTCTAAGTGGAACAAGTAGTGCTCCTGATCTTTCCCTGAGGAAGCTTTATGTTGGAAGCCTATCACCAGAAGTCACAAGTGAAATGCTGCTTAACTATTTTGCGCGGCATGGTGAAATAGAGGAAGGTTCAGTTGCATATGACAAGGATACAAATGAATCACGTGGCTTTGGCTTTGTCACGTACAAGACAGCGGAGGCTGCAAAGAAGGCCATCGATGACCTAGAAAAGACTCTTGGGGGAAGgaatataattgtaaaatatgcTGATTCCCACAAAGGTAAAACTGGCCAGCCGCCATTTCCTGCTGGAGTGGTTCCAATGGCGGCCTTATCTATGACCCCAGGATATATGCAGCCTGGAAAAGCTCATGTCAGTTCAGGGCCCCCAATCAATTACGGTTACCCCCAAACTGTAGCACCATATTCTGCTTCTCCTTATCCAAACCCTCCCACTGCACCCTCTTCTTATCCAACACAAGGGCAGATTCCTTATCCTCCAGTTTCTGCAAAGAAAGACCAACATGGGTTTCCGCCTACTCAACCTGTAGGAATGAACAACTACCCTTATTACTATCCCAAGCAATGA 1011 0.4471 MEDLKKRKLDEAGNGDFASKEELRFLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPAHRKLFVRGLAWNTTSETLRAAFQEHGEIEEGAVIHDKATGKSRGYGFITYKNMESTQQALRAPSKLIDGRLAVCNLACEGLSGTSSAPDLSLRKLYVGSLSPEVTSEMLLNYFARHGEIEEGSVAYDKDTNESRGFGFVTYKTAEAAKKAIDDLEKTLGGRNIIVKYADSHKGKTGQPPFPAGVVPMAALSMTPGYMQPGKAHVSSGPPINYGYPQTVAPYSASPYPNPPTAPSSYPTQGQIPYPPVSAKKDQHGFPPTQPVGMNNYPYYYPKQ 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1419 336 SMART rrm1_1 156 228 IPR000504 GO:0003723
Ssu4g1419 336 SMART rrm1_1 65 137 IPR000504 GO:0003723
Ssu4g1419 336 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 15 336 - -
Ssu4g1419 336 CDD RRM_RBM24_RBM38_like 64 139 - -
Ssu4g1419 336 Gene3D - 55 142 IPR012677 -
Ssu4g1419 336 SUPERFAMILY RNA-binding domain, RBD 149 243 IPR035979 GO:0003676
Ssu4g1419 336 MobiDBLite consensus disorder prediction 286 302 - -
Ssu4g1419 336 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 223 IPR000504 GO:0003723
Ssu4g1419 336 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 132 IPR000504 GO:0003723
Ssu4g1419 336 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 232 IPR000504 GO:0003723
Ssu4g1419 336 Gene3D - 143 240 IPR012677 -
Ssu4g1419 336 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 132 IPR000504 GO:0003723
Ssu4g1419 336 PANTHER UBP1-ASSOCIATED PROTEIN 2C-LIKE 15 336 - -
Ssu4g1419 336 MobiDBLite consensus disorder prediction 286 323 - -
Ssu4g1419 336 SUPERFAMILY RNA-binding domain, RBD 57 141 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1419 Ssu-Chr4 23656860 23661136 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1419 147 266 C2H2 Transcription Factor Family AT2G19380 33.858 7.40e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1419 K12741 - gmx:100776344 605.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1419 4 23656860 23661136 Ssu4g1419 4 23656860 23661136 ECH