Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1418 ATGTATGAGTATAGTTCCCAGATGTACGGGACTGAATGGGAATCCTACATGGGGATTACCAACCTAAAGGTTGTTGGATCAGAACAGCTGAGTGTTGAGCCCACAAAATCACCCTTCAACATTGTGACAGCTCCTCTTCAAACCCCTCCAGATTTTTGTGCAAGTGCAACCAAAAGCCTTGCGAGCTTTCAACCTCAACAACATGATCATCAGCATGAGATTGAAGTTCCTAGTTGGTGCTTTGACTTTCCAAAGACAACAACAAACTCGCACATGCTGAATATTCGCCAAGCCTCTGGAGATAACTtcaccactatcaccaccaaACAAGATCGACCCACCTCTCAATTCACAAGCTCCTTGTGCCCGGTTACTGAATCTTTCTTGTCTAGCAATGGTGCAGATTGTCCTTcttcttctaaaaaatattgtaaatttccTTCTTATTCcgaaaaatatagtaatattcAGCCTGACAATATGCCATACTACGATCACTTTTCACAAGAAGATGATAAATTACTGAGGGATGATGCTGCCACAGATGAAAGGccctttgaaatttcttttcagAGAAACCAGTTGCACTCATGTACAAAGCCAGAAAAGCATGCTCCTCATCGACTTTGTGGGGTTGCATGTGTAGCTTCTAGCAACTCTGCTTCTAGGAGaggcaaaaaaagaataagatggACTAAAGATCTTCATGAGCCATTTATGATGATTGTTAATAGCCTTGGTGGTCCCCAAAAGGCAAAGCCCAAGGCTATACTAGAGATGATGAAATCAGATTTGCTGTCCATTTCCCACGTTAAAAGTCATTTGCAGAAATGTAGGTCTACAACACACATGGACAAAGCTTTGCAGGAAAGATCTGAGGAAGGACATAAAACAGATGGGGTGGCTGAGCTTCAAGTCAAAATCCACATGCAAATTGAAGAATCACAGCAATTACAACTAGAGGTCCGGAGGAATATTTGCCAGCAACTAGAGATGCAACGAAATTTGCAAGTGCTAATTGAAGAGCAGAGCCAGCAGCTCAAGGAAATGTTAGATTACCAAAAGGAAAGAACCAAAATGGAGAAGACCCTTGACACAACTGGAAGTGACGGTCCCCAAATGATGGGTCAATTGTTTTGA 1140 0.3895 MYEYSSQMYGTEWESYMGITNLKVVGSEQLSVEPTKSPFNIVTAPLQTPPDFCASATKSLASFQPQQHDHQHEIEVPSWCFDFPKTTTNSHMLNIRQASGDNFTTITTKQDRPTSQFTSSLCPVTESFLSSNGADCPSSSKKYCKFPSYSEKYSNIQPDNMPYYDHFSQEDDKLLRDDAATDERPFEISFQRNQLHSCTKPEKHAPHRLCGVACVASSNSASRRGKKRIRWTKDLHEPFMMIVNSLGGPQKAKPKAILEMMKSDLLSISHVKSHLQKCRSTTHMDKALQERSEEGHKTDGVAELQVKIHMQIEESQQLQLEVRRNICQQLEMQRNLQVLIEEQSQQLKEMLDYQKERTKMEKTLDTTGSDGPQMMGQLF 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1418 379 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 16 366 IPR044848 GO:0003700
Ssu4g1418 379 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 226 280 IPR006447 GO:0003677
Ssu4g1418 379 SUPERFAMILY Homeodomain-like 225 280 IPR009057 -
Ssu4g1418 379 Gene3D - 225 283 - -
Ssu4g1418 379 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 16 366 - -
Ssu4g1418 379 Coils Coil 301 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1418 Ssu-Chr4 23637077 23639403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1418 213 354 G2-like Transcription Factor Family AT4G28610 43.750 1.07e-29 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu4g1418 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1418 - - gmx:102662952 590.112