Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1417 ATGAACGAGAACAAGATTGATTGGGGAGGACTGATTCAACAAAGTCATGGACTCAGTGGGGATTTTAATTCTGAGTTTGGCAATCGTTATTGTCAATATTTTGATATCAGACAGGCTTGGAATATGGGACCACTTGCCACGGTTGGAGGAGGAGCAGAACTGTTACCTAATATAGGCCCTGCCAAATCATCTGGCACCATTATGAGCCGTTTTGAGTCACCAGCTTCTGCCTTTTATGCTGCAGAAAACTGCATGGGGTTTGCAGAATACGATTGCCAAGTTGGTATTCACTCTTTGAGCTCTCAGTTATGTAAGATTAATGATTTGGAATTCCCTTTGTATCAATCTCCCAGGGAAACCCTTGTCTTGGATTCAGCAAACCAACCTGACCCCCCCAACTTTGACTTGTCAAACACTTTGCAATCCATAGTGAAATCTCAATTGAATAGTAATCAATGTCGTAGATCCCCTGAAAAGTCCAATAAAATTTCATGTGAGAATTTTCCCAGTTCCAAGTTCCTTCCAATTGAGCAACAGAAGTTGTTCATTGATGGTGTTATTAGGGGCTCATCATTTCCGAACAAAGGAAATCAGGACCATATGCTGAGATTCTCTTCTCAGATTGAGAAGTTGTCTCCAACACTTTCAGCAGGAAGTTTGTCTACTACTTTTGGAAACTCATCTTCTAATGGGGCGGTAGTCTCAAGTAAAACACGTATAAGGTGGACTAAGGATCTTCATGAGAAGTTTGTTGAGTGTGTAAATCGCCTTGGAGGCGCTGAGCAGGCAACACCAAAAGCTATATTAAAGATGATGGACACAGATGGTTTGACTATCTACCATGTCAAAAGTCATTTGCAGAAATATAGAATTGCAAAATTCATTCCAGAGCCCGGTCcagGGAAATCTGACAAAAGAACCCACACAAAGGATGTGCATCATCTTGATGTTAAAACTGGCTTACAAATTAGAGAGGCACTTAAGCTGCAATTAGATGCTCAAAGGTGTCTTCACGAACAACTAGAGATTCAGAGAAAATTACAGTTGCGAATTGAGGAACAAGGCAGACAACTAAAAAAGATGTTTGACCAGCAGCAAAAGACAAGTAATAACCTCTTGAATGCTCAGAATTCAGCCACTGATGAGACAACAATTAGTCATAAAGATGGTGAGGTTTCTGTTGCCGAAGGGGCTAACAATTCCTTCTTCCCTTCCAAGACCTCTCCAAGCCCataa 1236 0.4102 MNENKIDWGGLIQQSHGLSGDFNSEFGNRYCQYFDIRQAWNMGPLATVGGGAELLPNIGPAKSSGTIMSRFESPASAFYAAENCMGFAEYDCQVGIHSLSSQLCKINDLEFPLYQSPRETLVLDSANQPDPPNFDLSNTLQSIVKSQLNSNQCRRSPEKSNKISCENFPSSKFLPIEQQKLFIDGVIRGSSFPNKGNQDHMLRFSSQIEKLSPTLSAGSLSTTFGNSSSNGAVVSSKTRIRWTKDLHEKFVECVNRLGGAEQATPKAILKMMDTDGLTIYHVKSHLQKYRIAKFIPEPGPGKSDKRTHTKDVHHLDVKTGLQIREALKLQLDAQRCLHEQLEIQRKLQLRIEEQGRQLKKMFDQQQKTSNNLLNAQNSATDETTISHKDGEVSVAEGANNSFFPSKTSPSP 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1417 411 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 237 292 IPR006447 GO:0003677
Ssu4g1417 411 MobiDBLite consensus disorder prediction 374 411 - -
Ssu4g1417 411 Pfam Myb-like DNA-binding domain 241 290 IPR001005 -
Ssu4g1417 411 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 236 294 IPR017930 -
Ssu4g1417 411 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 43 410 IPR044848 GO:0003700
Ssu4g1417 411 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 43 410 - -
Ssu4g1417 411 Pfam MYB-CC type transfactor, LHEQLE motif 321 368 IPR025756 -
Ssu4g1417 411 Gene3D - 236 295 - -
Ssu4g1417 411 SUPERFAMILY Homeodomain-like 235 291 IPR009057 -
Ssu4g1417 411 Coils Coil 324 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1417 Ssu-Chr4 23597946 23600691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1417 220 365 G2-like Transcription Factor Family AT4G28610 58.108 7.25e-49 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu4g1417 Myb_DNA-binding 8.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1417 - - gmx:100527257 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1417 4 23597946 23600691 Ssu4g1417 4 23597946 23600691 ECH