Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1413 ATGATCACGGTGAAACGCGAATTGGATGATGACGGCGATACCAGCAGCGTCGACAAGCACGACTCTGAACTCCACGCCGTTAACGACGCTGATTTCCAAACTCTGAAAGGCCGTCGTGGTATTCGTTCCCGGTACCTCGCCGTCGCGAACATGATTCACGATGAAAGGGAGGAAATTGCGAGGCCTGACTCTGACAAGTTTGATTTGATCTTTAATGAAATGGAGAGCTTACATCAGCtagTTACAAAACCAAGAGAACAAGTAGCTGATGCAAAGGCTCTTTTGGACATCACCCAATCCTTGGTAATGTCTGTGAAAACTGTTGCCAATGGTGGACTAAGTCCTTCAGAATTTGTCACCCACATTCTTAAAAAATCCGGAGTACAAGGTGGATCAAGTAATAGCACAGAAGATTGCAGCAGAAACTCGGTAGCTTGGAAGGATATTGGAGTTGCAGTGTCACATGTTTTTAGAGGCGGTTGTGGGTGTTGTACAATGATTGGCCCAATGGATGCTGAAATAAAGCAGAGGAAGGTCATTAATCGTCGAAAACGTGAGAGACCCACTGAGTTGGCACGGCCTGAAGAGCTTGGTGGAGGTTCAGGGGAAGAGAGAACTGAGActgataaaaatatgttaactaTGTTTAACATCTTAAGGATTAATAAAGTTGTCAAGCTTGAAAATCTGGTTTTGAATCGGAACTCATTTGCACAAACGGTGGAGAATTTAtttgctttatcttttttagtCAGAGATGGGCGGGCTGAAATAAAAGTGAATGAGGCTGGACAGCAACTAGTTTCGCCAAGGAAGGCTCCCGCTGCAAATGCAGTTCTTTCCAGGGATGTTGCTTTCAGCCACTTTGTTTTCCGATTTGACTTCAATGATTGGAAGCAattcttttcctctctttttgcTCCTCGCTCCAAACAAAACCCCTCTTTCAGGGTCACAGCTGCTAGGGTTAGGGTTTTTCCACCTTCCGTGTCTATCAGTCTTCTTCTACTTTCGTTTCggtctctctcttcaattctaaACTTTCACGCTAGGGTTTCCTCGGTAATTGAAGCTCATTCTTTCTTCCGGATCCCAATCTATGGATACCCGCAAGAGGGGAAGACCCGAACCCGGCTTCAGCTTAAATGGCGGATTCAAGAAATCCAAGCCAGCACTGCTGGTTGCCCATTTGGGGAGGGCTGCCACTTCTTGCACTATGTTCATGGTGGTTATAATGCTGTTGCCCAGATGATGAATCTAACACCTGCAGCACCTCCAGCATCAAGAAATGTTGCAGCCCTGCCACCTGTACCTAATGGATCCACACCACCTGTTAAGACCCGCATATGCAACAAGTTTAATACTGCTGAAGGTTGCAAATTTGGGGACAAATGCCATTTTGCCCATGGTGAATGGGAACTTGGCAAGCTTATTGCTCCTTCATTTGATGATCATCGCTCCATGGGACCTACCGCAGCAGGTCGTCTTGCTGGTCGAATGGAGCCTCCTCCTGGTCCTGCCACAACTTTTGGTGCCAATGCCACGGCCAAGATCAGTGTGGAAGCTTCCCTGGCTGGAGCAATCATTGGGAAGGGTGGTGTCAACTCAAAACAGATATGCCGCCAAACTGGAGCCAAACTTTCAATTCGAGAGCATGAATCTGACCCAAATCTTAGAAATATTGAACTTGAGGGAAGTTTTGAGCAAATTAAGGAAGCAAGCAACATGGTAAAGGATTTACTATTGACCCTGCAAAGGTCTGCACCACCTAAAACAACCCCAGGTGCTCCTGGCGCACCTGCCCCTCATGGAAGTAACTTCAAGACCAAACTCTGTGAGAATTTTGCAAAAGGATCTTGCACGTTTGGAGAAAGATGTCACTTTGCACATGGAGCTGCTGAATTGCGTAAATGA 1914 0.4478 MITVKRELDDDGDTSSVDKHDSELHAVNDADFQTLKGRRGIRSRYLAVANMIHDEREEIARPDSDKFDLIFNEMESLHQLVTKPREQVADAKALLDITQSLVMSVKTVANGGLSPSEFVTHILKKSGVQGGSSNSTEDCSRNSVAWKDIGVAVSHVFRGGCGCCTMIGPMDAEIKQRKVINRRKRERPTELARPEELGGGSGEERTETDKNMLTMFNILRINKVVKLENLVLNRNSFAQTVENLFALSFLVRDGRAEIKVNEAGQQLVSPRKAPAANAVLSRDVAFSHFVFRFDFNDWKQFFSSLFAPRSKQNPSFRVTAARVRVFPPSVSISLLLLSFRSLSSILNFHARVSSVIEAHSFFRIPIYGYPQEGKTRTRLQLKWRIQEIQASTAGCPFGEGCHFLHYVHGGYNAVAQMMNLTPAAPPASRNVAALPPVPNGSTPPVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKLIAPSFDDHRSMGPTAAGRLAGRMEPPPGPATTFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEASNMVKDLLLTLQRSAPPKTTPGAPGAPAPHGSNFKTKLCENFAKGSCTFGERCHFAHGAAELRK 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1413 637 CDD KH-I 515 578 - -
Ssu4g1413 637 Gene3D K Homology domain, type 1 510 605 IPR036612 GO:0003723
Ssu4g1413 637 ProSiteProfiles Type-1 KH domain profile. 513 577 - -
Ssu4g1413 637 SUPERFAMILY CCCH zinc finger 605 636 IPR036855 GO:0046872
Ssu4g1413 637 ProSiteProfiles Zinc finger C3H1-type profile. 444 472 IPR000571 GO:0046872
Ssu4g1413 637 Pfam RNA-binding, Nab2-type zinc finger 395 405 - -
Ssu4g1413 637 ProSiteProfiles Zinc finger C3H1-type profile. 606 633 IPR000571 GO:0046872
Ssu4g1413 637 Pfam Nse4 C-terminal 225 302 IPR014854 -
Ssu4g1413 637 PANTHER NON-STRUCTURAL MAINTENANCE OF CHROMOSOMES ELEMENT 4 1 304 - -
Ssu4g1413 637 MobiDBLite consensus disorder prediction 181 206 - -
Ssu4g1413 637 SMART c3hfinal6 444 471 IPR000571 GO:0046872
Ssu4g1413 637 SMART c3hfinal6 606 632 IPR000571 GO:0046872
Ssu4g1413 637 PANTHER UNCHARACTERIZED 1 304 IPR027786 GO:0005634|GO:0006281|GO:0030915
Ssu4g1413 637 MobiDBLite consensus disorder prediction 1 22 - -
Ssu4g1413 637 Pfam KH domain 516 578 IPR004088 GO:0003723
Ssu4g1413 637 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 503 583 IPR036612 GO:0003723
Ssu4g1413 637 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 446 471 IPR000571 GO:0046872
Ssu4g1413 637 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 607 631 IPR000571 GO:0046872
Ssu4g1413 637 Gene3D - 606 637 - -
Ssu4g1413 637 Gene3D - 441 476 - -
Ssu4g1413 637 SMART kh_6 512 582 IPR004087 GO:0003676
Ssu4g1413 637 SUPERFAMILY CCCH zinc finger 444 475 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1413 Ssu-Chr4 23492446 23501245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1413 35 299 Non-SMC Element family AT1G51130 53.208 6.94e-91 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu4g1413 Nse4_C 4.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1413 - K22825 gsj:114406775 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1413 4 23492446 23501245 Ssu4g1413 4 23492446 23501245 ECH
Ssu4g1413 4 23492446 23501245 Ssu7g2745 7 56272388 56277456 PCT