Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1410 ATGGAGCGAGTGCGGTGTGCCTACGGCTCTGTAGATGAAGCGTTCGAAATTGGGAAAGAGACGTATCGGGGGCAGCAATACAGCCAGATTTACTTCGCACGCCTTCATTTGATGAGAACCCTCTTGTATTCCCTCGTTCCCCGTTGGAGACCCAATTTTCCTGTGTGCACGGTGCTGGGATTGGAAGAGGACAAGGAGTGTGTCATTGTCGGAACCCTTTATAAACACATGAAGCTCAAACCTTGCATTCTTGACGAGTATTCTAAGCAGAGATCAGTGGTTCCACTCGTCAAGCTGCATAACTTCATGCACCCAGGTGATCACCTAGTTTTGGAAGATGAAAGTGGACGGGTTAAGCTCAGCGGGAGTATCATTTTGCCATCTGAATATGTAACAGGAATTGTGGTTGCTTTACTTGGAAAGGAATCGGGGGCAGGTGACTTTTTGGTTCAGGAGGTCCTAGATGCTGGCTTACCACCACAGATAGAATTTCCCCTTAAATCAAGGGAAGACAAATACGTCGTTCTTGTGTCAGGGTTAAGTGTTGGTAGCGGCAACTCTAATCCTCTTCAGTTTCAGCTTCTCATTGATCATATTACGGGGCATTTAGGAGATGAGAAGGAGCAAAGTATTGCATCACAAATTGTTCATGTTGTCTTTGCTGGAAATTCAGTTGAGATACCTCGCAGACTTCTTAATGGACAGAATTTGGCTTCAAAGGATCTCTCAAGGATGGCTGAGCCAATAAAGGAGCTAGATATTCTGTTGAGTCAGATAGCTGCTGGTTTGCCTTTGGATATCATGCCAGGACCCAGTGACCCTGCTAATTTCTCATTACCACAGCAGCCATTGCATAGATGCCTTTTCCCTGGGTCGTCGGCGTATAATACTTTTAGATCTTGTACAAATCCTCATTGTTTTGAGCTTGATAATGTCAGGTTTCTTGGGACATCAGGTCAAAATGTAGATGATCTTGAGAAGTATTCAGAGGCAAAAGATAAACTTGAATTCATGGAAAGGACATTAAGATGGAGGCATTTGGCACCCACTGCACCTAATACTCTTGGATGCTATCCTTGTACTGATAGGGATCCTTTCTTCATTGAGAGCTGTCCTCATGTTTACTTTGTTGGAAATCAAGATAAATTTGAAACTCGTGTCATAAAggGATCAGAAGGGCAATTGGTGAGACTTATATGTGTTCCTAAATTCAGTGAAAGTGGAGTTGCTGTTATGCTAAATCTGAGGGATCTTGAATGTCATGCTCTCAGTTTTGGAACTCAATTCAGCTCATAA 1296 0.4336 MERVRCAYGSVDEAFEIGKETYRGQQYSQIYFARLHLMRTLLYSLVPRWRPNFPVCTVLGLEEDKECVIVGTLYKHMKLKPCILDEYSKQRSVVPLVKLHNFMHPGDHLVLEDESGRVKLSGSIILPSEYVTGIVVALLGKESGAGDFLVQEVLDAGLPPQIEFPLKSREDKYVVLVSGLSVGSGNSNPLQFQLLIDHITGHLGDEKEQSIASQIVHVVFAGNSVEIPRRLLNGQNLASKDLSRMAEPIKELDILLSQIAAGLPLDIMPGPSDPANFSLPQQPLHRCLFPGSSAYNTFRSCTNPHCFELDNVRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTLGCYPCTDRDPFFIESCPHVYFVGNQDKFETRVIKGSEGQLVRLICVPKFSESGVAVMLNLRDLECHALSFGTQFSS 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1410 431 Pfam DNA polymerase alpha/epsilon subunit B 174 384 IPR007185 GO:0003677|GO:0006260
Ssu4g1410 431 Pfam DNA polymerase delta subunit OB-fold domain 26 153 IPR040663 -
Ssu4g1410 431 Gene3D - 165 430 - -
Ssu4g1410 431 Gene3D - 33 156 - -
Ssu4g1410 431 CDD MPP_PolD2_C 173 425 IPR041863 -
Ssu4g1410 431 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 5 425 IPR024826 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1410 2 430 Core DNA Replication Machinery Family AT2G42120 75.991 0.0 705
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1410 K02328 - gmx:100780072 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1410 4 23440769 23446570 Ssu4g1410 4 23440769 23446570 ECH