Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1408 ATGTTTTCTTGGTTTGCAAGTATAGTTTCGTCGTGCTTGCGGCCTGTGAGGCGCTATGCTCGCATGAGcaacgatgatgatgatgttgatgaatctTCTTCATCCACTGAAGACTCTCTTCTGTGGTGTAGAGACCTTGAGAAGCATTCTTGTGGCGAATTCTCCTTCGCCGTGGTTCAGGCCAATGAAGTTATTGAGGATCATAGCCAGGTTGAGATTGGCTCTGATGCCATCTTTGTTGGGGTTTATGATGGCCATGGTGGTCCTGAAGCTTCCCTCTTCATCAGAGATCACCTCTTCCAGCACCTAATGGGGATTGCTCGGGATAATGGAACTATCTCTGAAGAAATTCTCAGGGGTGCTGTTTCTGCTACAGAGGATGGGTTTCTGACTCTTGTTCATAGGAGTTATATGATAAAGCCGTTGATTGCATCAATTGGTTCCTGTTGTCTGGTTGGTGTTATCTGGAAAGGAACTCTATATATCGCCAATCTTGGAGACTCCCGTGCCATAATTGGTTCTACAGGTAGATCTAACCAGATCATTGCTGAGCAATTGACTAGAGAGCACAATGCTAGTAGAGAGGATATTAGACTAGAACTCAGGGCTTTGCATCCACAAGATTCACAAATTGTAGTTATGAATCGCGGAACATGGCGTGTTAAAGGCATCATCCAGGTATCCAGATCCATAGGGGATGCGTATTTGAAGCGGCCACAGTTCTCTCTCGATCCATCATTCCCACGGTTCCACTTGCCTGAACCTATTACCCAACCTGTGCTAACAGCAGAACCATCTCTATGTTCAAGAGTTTTGCAACCCCATGACAAATTCCTTATATTTGCGTCCGATGGACTTTGGGAACACATGACTAATCAGCAAGCAGCTGAGGTTGTTTATAAAAATCCACGAAATgGGGTTGCAAGAAAACTTGTAAAGGCTGCTCTAAAGGAGGCAgctaataaaaggaaaatgaaatataaagagCTTCAGAAGATTGAGAAAGGGAACAGAAGGATTTTTCATGATGATATCACTGTGATTGTTGTCTTCATAGACCATGAGTTGCTACGGGAGAAAGTTACTGTACCAGAGTTGTCCATCAGAGGGTTCATCGACTCGGCTGGaccatcaaattttaaatgtgtCCGGGAGTTTATGTGA 1164 0.4201 MFSWFASIVSSCLRPVRRYARMSNDDDDVDESSSSTEDSLLWCRDLEKHSCGEFSFAVVQANEVIEDHSQVEIGSDAIFVGVYDGHGGPEASLFIRDHLFQHLMGIARDNGTISEEILRGAVSATEDGFLTLVHRSYMIKPLIASIGSCCLVGVIWKGTLYIANLGDSRAIIGSTGRSNQIIAEQLTREHNASREDIRLELRALHPQDSQIVVMNRGTWRVKGIIQVSRSIGDAYLKRPQFSLDPSFPRFHLPEPITQPVLTAEPSLCSRVLQPHDKFLIFASDGLWEHMTNQQAAEVVYKNPRNGVARKLVKAALKEAANKRKMKYKELQKIEKGNRRIFHDDITVIVVFIDHELLREKVTVPELSIRGFIDSAGPSNFKCVREFM 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1408 387 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 7 372 - -
Ssu4g1408 387 SMART PP2C_4 47 350 IPR001932 -
Ssu4g1408 387 CDD PP2Cc 54 352 IPR001932 -
Ssu4g1408 387 Pfam Protein phosphatase 2C 74 320 IPR001932 -
Ssu4g1408 387 SUPERFAMILY PP2C-like 59 353 IPR036457 -
Ssu4g1408 387 ProSiteProfiles PPM-type phosphatase domain profile. 53 352 IPR001932 -
Ssu4g1408 387 Gene3D - 21 361 IPR036457 -
Ssu4g1408 387 ProSitePatterns PPM-type phosphatase domain signature. 79 87 IPR000222 GO:0043169
Ssu4g1408 387 PANTHER ALPHABET, ISOFORM E-RELATED 7 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1408 Ssu-Chr4 23422981 23425785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1408 1 380 PP2C-type Phosphatase Gene Family AT5G06750 66.753 0.0 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1408 K01102 - gmx:100806476 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1408 4 23422981 23425785 Ssu7g2738 7 56030669 56034146 PCT