Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1398 ATGCTTTCTTCTACTCATTCCCTACTCACGACCATTTTCTTAGTGCTAATAGTCCTTCTTCATCCATCAAATGCTCAACTGAGTTCAACCTTCTACTCCAGCACATGCCCCAACGTGTCTTCCATTGTGCGCAGTGTTATCCAGCAGGCTCTGCAATCTGATTCTCGTATTGTTGCGAGCCTAACTCGTCTTCATTTTCATGATTGCTTTGTTAATGGATGTGATGGATCCGTTTTGTTAGACCAAGGTGGCAACATAACACTGAGCGAGAAAAATGCAACTCCCAACAATAATTCCGCTCGTGGCTTTAATGTAGTCGACAACATAAAGACATCTGTTGAAAATTCATGCCCTGGTGTTGTATCTTGTGCTGATATTCTTGCCCTTGCTGCTGAAGCTTCTGTTTCTTTGgCAGGAGGTCCTACATGGAACGTACTACTTGGCAGAAGGGACGGTTTGATTGCAAACCAATCTGGTGCGAACTCCTCCATTCCCACTCCATTTGAAAGCCTGGCCAATATCTCAGCCAAATTTGCTGCCGTTGGCCTAAACACAATTGATCTCGTTGCATTATCTGGTGCACATACTTTTGGTCGTGCACAATGTAGATTTTTCAACCAGAGACTATTCAACTTCAGCGGCACGGGTAGCCCTGATCCCACGCTAAACGCAACCTATTTGGCGACCCTGCAGCAAAATTGTCCACAAAATGGAAGCGGGACCACCCTGAACAACCTTGACCCTTCATCACCAGACACCTTTGATAACAACTACTTCAAAAATCTTCTCAACAATCGGGGCCTTCTCCAATCAGACCAAGAGCTGTTTTCCACTAATGGCTCTGCCACAATATCCATTGTTAACAACTTCGCCACCAACCAAACCGCATTCTTCCTAGCCTTTGCTCAGTCCATGATTAATATGGGTAATATTAGCCCATTAACTGGAAGCCAGGGAGAAATCAGATCCGATTGTAAGAAAGTCAATGGAAGTTAA 996 0.4448 MLSSTHSLLTTIFLVLIVLLHPSNAQLSSTFYSSTCPNVSSIVRSVIQQALQSDSRIVASLTRLHFHDCFVNGCDGSVLLDQGGNITLSEKNATPNNNSARGFNVVDNIKTSVENSCPGVVSCADILALAAEASVSLAGGPTWNVLLGRRDGLIANQSGANSSIPTPFESLANISAKFAAVGLNTIDLVALSGAHTFGRAQCRFFNQRLFNFSGTGSPDPTLNATYLATLQQNCPQNGSGTTLNNLDPSSPDTFDNNYFKNLLNNRGLLQSDQELFSTNGSATISIVNNFATNQTAFFLAFAQSMINMGNISPLTGSQGEIRSDCKKVNGS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1398 331 ProSiteProfiles Plant heme peroxidase family profile. 26 329 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu4g1398 331 PANTHER PEROXIDASE 72-RELATED 5 330 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu4g1398 331 Pfam Peroxidase 43 292 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu4g1398 331 SUPERFAMILY Heme-dependent peroxidases 26 329 IPR010255 GO:0004601|GO:0006979|GO:0020037
Ssu4g1398 331 Gene3D Peroxidase, domain 2 165 308 - -
Ssu4g1398 331 Gene3D - 31 329 - -
Ssu4g1398 331 CDD secretory_peroxidase 26 328 IPR033905 GO:0004601|GO:0042744
Ssu4g1398 331 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu4g1398 331 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu4g1398 331 PRINTS Plant peroxidase signature 261 278 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu4g1398 331 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu4g1398 331 PRINTS Plant peroxidase signature 245 260 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu4g1398 331 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu4g1398 331 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu4g1398 331 PRINTS Plant peroxidase signature 303 316 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu4g1398 331 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu4g1398 331 PANTHER PEROXIDASE 5 330 - -
Ssu4g1398 331 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Ssu4g1398 331 PRINTS Haem peroxidase superfamily signature 247 262 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu4g1398 331 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu4g1398 331 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu4g1398 331 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu4g1398 331 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1398 Ssu-Chr4 23274237 23276321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1398 9 331 Peroxidase AT5G06720 75.692 1.14e-175 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1398 K00430 - gmx:100810355 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1398 4 23274237 23276321 Ssu4g1398 4 23274237 23276321 ECH