Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1397 ATGGAGGAAGAGACCTCCGATGCAATGAACCTCGATTTGAATCTGGGCCCAGGCCCGGAGCCTGAAACTGGGCCCATAAGCAATGAAGCTGTGAACTTGGACGATTGGATAGGGGAGCCTCGTCAGAGAATTAGCGAAGCCGTGAGGTTTAGGGCACGGCAACGGTGGCGATGGCAGCATCTTCCTCTGCCTCATGTTCACATTCCCACTGAAGCTGCGCGGCATTTTCAAATTCCGCCTGAAGCACATAACATGTCCGTGGAATTGAACCAGTTTTTGGTCAATTCTGGCAATGGAAGTGCCCTGCAGGCCGGGGAAGGCAGTGTGGTGGCTGAGGAGAGAATGGAGGAGGCGCCGGCGCCGAAGGCATGTGAGAATGTCAATGGTGTGGCGGAGGATGAGGCGTTGCAGAAGAAGGATGATGTTGAAAAGGGTAGTGGCAATGATGGGGACTTTTTTGATTGTAACATCTGTTTGGACCTGGCTAGGGATCCTGTTGTGACTTGTTGTGGGCATTTGTTTTGTTGGCCGTGCCTCTATAGGTGGCTGCACCTGCATTCGGATGCGAAGGAGTGTCCGGTTTGCAAGGGAGAGGTGACTCTTAAAAGTGTTACCCCGATATATGGCCGTGGGAACAATGCCCGTGTTTCTGAGGAGGATTCTGCTCTTAAGATCCCTCCCAGGCCGCACGCAAGGCGGGTTGAGAGTCTGAGACAAACCATTCAAAGGAATGCATTTGCACTCCCCGTGGAAGAGATGATTCGGCGTCTTGGAAGCAGAATTGATCTTACTCGTGATTTGGTTCAGCCACATGAGCCAGACAATGCTCGTGAGACAGCCGAGAGAACTACTTCCTTGCTAAGCAGGTTCTTGACAGCGCGAGGGATGCGGAGAGAGCAGAATCTAGGGGCACCCCAAGAGGATGTAATGGGTTTGACACAGAACAATGTTAATACTTCTGAGGCAGGGGATAACCCTGGTAGGGTGCAGTCCATTTTGCTTCGAAGGACACAGTCACACAGAGCAACACTTTCTACTCTTTCATCAGCACTGACTTCTGCTGAAAGGTTAGTTGAGGCATATTTCCGTAGCAATCCATTAGGTAGGAACCAAGAacaacctcctcctcctccagtTGATGACAGAGATTCCTTTTCAAGCATTGGTGCTGTTATAAATTCAGAGAGTCAAGTGGACACTGCTGTAGAGATTGATTCCATGGTATCCTTGTCAACATCCTCTTCTAGGAGGAGGAATGATGCTTCAAGAGTGTCAGATGTGGATAGTGGAGATTCTCGTGCCCCAAGGCGCAGACGTTTGAACTGA 1326 0.4962 MEEETSDAMNLDLNLGPGPEPETGPISNEAVNLDDWIGEPRQRISEAVRFRARQRWRWQHLPLPHVHIPTEAARHFQIPPEAHNMSVELNQFLVNSGNGSALQAGEGSVVAEERMEEAPAPKACENVNGVAEDEALQKKDDVEKGSGNDGDFFDCNICLDLARDPVVTCCGHLFCWPCLYRWLHLHSDAKECPVCKGEVTLKSVTPIYGRGNNARVSEEDSALKIPPRPHARRVESLRQTIQRNAFALPVEEMIRRLGSRIDLTRDLVQPHEPDNARETAERTTSLLSRFLTARGMRREQNLGAPQEDVMGLTQNNVNTSEAGDNPGRVQSILLRRTQSHRATLSTLSSALTSAERLVEAYFRSNPLGRNQEQPPPPPVDDRDSFSSIGAVINSESQVDTAVEIDSMVSLSTSSSRRRNDASRVSDVDSGDSRAPRRRRLN 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1397 441 MobiDBLite consensus disorder prediction 363 385 - -
Ssu4g1397 441 SMART ring_2 155 195 IPR001841 -
Ssu4g1397 441 MobiDBLite consensus disorder prediction 1 25 - -
Ssu4g1397 441 ProSiteProfiles Zinc finger RING-type profile. 155 196 IPR001841 -
Ssu4g1397 441 SUPERFAMILY RING/U-box 150 208 - -
Ssu4g1397 441 MobiDBLite consensus disorder prediction 419 441 - -
Ssu4g1397 441 Pfam Zinc finger, C3HC4 type (RING finger) 155 195 - -
Ssu4g1397 441 MobiDBLite consensus disorder prediction 408 441 - -
Ssu4g1397 441 PANTHER OS01G0830200 PROTEIN 13 441 - -
Ssu4g1397 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 245 IPR013083 -
Ssu4g1397 441 CDD RING-HC_AtRMA_like 153 197 - -
Ssu4g1397 441 ProSitePatterns Zinc finger RING-type signature. 170 179 IPR017907 -
Ssu4g1397 441 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 13 441 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1397 Ssu-Chr4 23258141 23259466 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1397 1 432 C3H Transcription Factor Family AT3G58030 53.880 5.03e-146 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1397 K10666 - gmx:100811099 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1397 4 23258141 23259466 Ssu4g1397 4 23258141 23259466 ECH