Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1396 ATGGAGCTGGCTCTGAGCTTAGGCGACACACCCAAGCCCTTCTCTTTGCCCACAAACAATGATTCAGTGGGTTTGTGCATAGCACTGGGTGACGACAAAAGGAGTTCCTCAGATCCACCCGTTCAGCTCGACCTTCTTCCTTCAACACCCGTTCTTCCTTCTTCACACCTTCCAATTCCATGGCTCTCCGATGCACTGGGTATGGAACGGGTCACACCAGAGATTCCGGTGAGGGCGGTGGATGACGCCGACGACGGTGCGGCACTTTCATCCCCCAACAGTGCAGTGTCATCTTTTCAGGTGGATTTTTGTGTCAGGAACAGTAGAAAGTCTTGTGAGGGTGCCAGCGACGACGACGAAAACGGCTCAACAAGGAAGAAACTCAGGCTCTCTAAAGAACAATCAGCTTTCCTCGAAGACAGCTTCAAAGAACACACCACTCTCAATCCCAAGCAAAAACTTGCGCTTGCAAAAGAGTTGAATCTCCGTCCCCGTCAAGTGGAAGTTTGGTTTCAAAACAGAAGGGCAAGGACAAAGTTGAAGCAGACAGAGGTGGATTGTGAGTACTTAAAGAGATGCTGTGAGAGTCTGACAGAAGAGAATAGGAGGTTGCAGAAGGAACTGCAAGAACTGAGGGCATTGAAAACTTGTCAACCATTTTACATGCAGCTTCCAGCTACCACCCTCACCATGTGTCCCTCTTGTGAACGGGTCGCCACCAACACCGCCGGTGCCGCCGCCACCAACAATAATAATGCCTCTCAAATCCAAGCTGTGTTGTCTGCTGAAAAGCCCAGAATATTGCCCTGA 810 0.5025 MELALSLGDTPKPFSLPTNNDSVGLCIALGDDKRSSSDPPVQLDLLPSTPVLPSSHLPIPWLSDALGMERVTPEIPVRAVDDADDGAALSSPNSAVSSFQVDFCVRNSRKSCEGASDDDENGSTRKKLRLSKEQSAFLEDSFKEHTTLNPKQKLALAKELNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKELQELRALKTCQPFYMQLPATTLTMCPSCERVATNTAGAAATNNNNASQIQAVLSAEKPRILP 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1396 269 SMART HOX_1 123 185 IPR001356 GO:0003677
Ssu4g1396 269 ProSiteProfiles 'Homeobox' domain profile. 121 181 IPR001356 GO:0003677
Ssu4g1396 269 Pfam Homeodomain 125 179 IPR001356 GO:0003677
Ssu4g1396 269 CDD homeodomain 125 182 IPR001356 GO:0003677
Ssu4g1396 269 Coils Coil 187 214 - -
Ssu4g1396 269 SUPERFAMILY Homeodomain-like 116 182 IPR009057 -
Ssu4g1396 269 CDD bZIP 174 213 - -
Ssu4g1396 269 Pfam Homeobox associated leucine zipper 181 215 IPR003106 GO:0006355|GO:0043565
Ssu4g1396 269 ProSitePatterns 'Homeobox' domain signature. 156 179 IPR017970 GO:0000981|GO:0006355
Ssu4g1396 269 SMART halz 181 224 IPR003106 GO:0006355|GO:0043565
Ssu4g1396 269 PANTHER - 33 257 - -
Ssu4g1396 269 Gene3D - 129 179 - -
Ssu4g1396 269 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 33 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1396 Ssu-Chr4 23217611 23218894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1396 117 267 Homeobox Transcription Factor Family AT4G37790 68.212 2.66e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu4g1396 Homeodomain 2.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1396 K09338 - gmx:100784703 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1396 4 23217611 23218894 Ssu4g1396 4 23217611 23218894 ECH
Ssu4g1396 4 23217611 23218894 Ssu7g2730 7 55573837 55575598 PCT