Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1390 ATGGCTCCTGGAAGCGGTGTTTTCAAAGAAGTTCTTGAATCTCACCTTATGTGTTCAGATTATGAAACAGGCAAGGCAAAATCTGAGGCCAAGAGTAACGGTACATCTACAAAATCTAGTGTTGGGTTGAATGGAAAGAATGGAATTAGTTCAAATAATGGCGTGTACGAATTACTTGGATGCCCTGTTTGCAAGAATTTAATGTATCCCCCAATTCACCAGTGCCCAAATGGCCATACATTATGTTCCAATTGTAAAATTAGAGTCCATAATCTCTGCCCATCCTGTCATCATGATCTTGGGAATATAAGGTGTTTGGCTTTGGAGAAAGTGGCAGAATCATTGGAGCTTCCTTGCAGATATCAGAGTCTAGGTTGTCATGATATATTCCCATACTATGCTAAGCTCAAGCATGAGCAAAATTGTGGATTTCGTCCATACAATTGCCCCTATGCTGGATCTGAGTGCTCTGTGATGGGTGACATTCCGACTCTTGTTGCCCATCTCAAGGATGATCACAAGGTTGACATGCATGACGGATGCACCTTCAATCATCGATATGTCAAAGCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACTGTTTTTAATAGTTTTGGAAGGCATTTCTGCTTGCACTTTGAGGCGTTCCAGCTTGGCACAGCTCCAGTGTATATGGCTTTTTTACGATTTATGGGTGATGACAATGAAGCAAAGAAATTCAGCTACAGCTTGGAAGTTGGTGCAAATGGCCGCAAACTTATATGGCAAGGAATTCCAAGGAGCATTCGGGACAGTCATAGAAAAGTTCGAGATAGTCAAGATGGACTTATAATTCAGAGGAACCTAGCCCTTTATTTTTCTGGTGGAGAAAAACAGGAGTTGAAGTTGAGAATCACTGGTCGTATATGGAGAGAGGATTGA 930 0.4151 MAPGSGVFKEVLESHLMCSDYETGKAKSEAKSNGTSTKSSVGLNGKNGISSNNGVYELLGCPVCKNLMYPPIHQCPNGHTLCSNCKIRVHNLCPSCHHDLGNIRCLALEKVAESLELPCRYQSLGCHDIFPYYAKLKHEQNCGFRPYNCPYAGSECSVMGDIPTLVAHLKDDHKVDMHDGCTFNHRYVKANPHEVENATWMLTVFNSFGRHFCLHFEAFQLGTAPVYMAFLRFMGDDNEAKKFSYSLEVGANGRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGEKQELKLRITGRIWRED 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1390 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 113 IPR013083 -
Ssu4g1390 309 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 169 302 IPR008974 GO:0005515
Ssu4g1390 309 CDD RING-HC_SIAHs 61 96 - -
Ssu4g1390 309 ProSiteProfiles Zinc finger SIAH-type profile. 114 174 IPR013010 GO:0008270
Ssu4g1390 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT1-RELATED 1 309 - -
Ssu4g1390 309 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 309 - -
Ssu4g1390 309 SUPERFAMILY TRAF domain-like 114 306 - -
Ssu4g1390 309 Pfam Seven in absentia protein family 103 302 IPR018121 GO:0005737|GO:0006511|GO:0007275
Ssu4g1390 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 168 IPR013083 -
Ssu4g1390 309 ProSiteProfiles Zinc finger RING-type profile. 61 97 IPR001841 -
Ssu4g1390 309 SUPERFAMILY RING/U-box 53 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1390 Ssu-Chr4 23120135 23122584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1390 1 309 C3H Transcription Factor Family AT2G41980 79.612 0.0 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1390 K04506 - gmx:100813966 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1390 4 23120135 23122584 Ssu4g1390 4 23120135 23122584 ECH