Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1389 ATGTTCTGCTGCGGAGGTGCAGAGGAGGAGAGCAGCGGCCCCCCTGCAAACCAATACCAAACTGCACCACCTAGAGGGGGTAGCACATACGGTGGAGGAGGAGGCAATGATAGAGGAGAGCCTAGGGGCAATGTTGCAAAGAGTGGTGCCCCGCAGAAAGTATTGCCAATTGAGATACCCTCTATGCCATTGGATGAGTTAAATAGGTTAACAGGGAACTTTGGTTCAAAGGCTTTTATTGGCGAAGGTTCCTATGGACGAGTTTACTATGCAAAATTGAGTGATGGTACCGATGCTGCAATTAAAAAGCTGGATACTAGTTCTTCCCCAGAACCTGACTCCGATTTTGGGGCTCAGTTATCAGTTGTTTCAAGACTGAAGCATGACAATTTTGTGGAGTTGATTGGGTATTGTCTAGAGGCAGATAATAGAATTTTGGTTTATCAATATGCAAGTCTTGGTTCTTTGCATGACGTGTTACATGGAAGGAAAGGTGTACAAGGGGCTGAACCTGGTCCAGTTTTAAACTGGAACCAGAGAGCAAAAATTGCATTTGGTGCAGCAAAAGGACTTGAGTTTCTTCACGAAAAGGTTCAGCCTTCTATTGTTCATCGCGATGTTAGATCCAGCAATGTCTTACTGTTCAATGACTATGAGGCCAAGATAGCTGATTTCAGCTTGACAAATCAGTCTTCTGACACAGCCGCTCGGCTACATTCAACAAGAGTCTTGGGAACATTTGGCTATCATGCTCCAGAGTATGCCATGACCGGGCAGATAACCCAGAAAAGTGATGTTTACAGTTTTGGGGTTGTGCTTTTAGAACTCTTGACAGGAAGAAAGCCAGTAGATCACACAATGCCCAAAGGGCAACAAAGTCTTGTAACTTGGGCAACTCCAAGgctgagtgaggacaaagtgaAACAGTGTGTGGATCCTAAGCTAAACAATGACTATCCACCAAAGGCTATTGCTAAGTTGGCCGCTGTGGCAGCACTTTGTGTTCAGTATGAAGCTGACTTCAGACCAAACATGACGATTGTTGTCAAAGCTCTCCAGCCACTTCTCAATGCAAAACCGCCTGGTCCTGACTCTCATGCTTGA 1104 0.4457 MFCCGGAEEESSGPPANQYQTAPPRGGSTYGGGGGNDRGEPRGNVAKSGAPQKVLPIEIPSMPLDELNRLTGNFGSKAFIGEGSYGRVYYAKLSDGTDAAIKKLDTSSSPEPDSDFGAQLSVVSRLKHDNFVELIGYCLEADNRILVYQYASLGSLHDVLHGRKGVQGAEPGPVLNWNQRAKIAFGAAKGLEFLHEKVQPSIVHRDVRSSNVLLFNDYEAKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNDYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNAKPPGPDSHA 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1389 367 MobiDBLite consensus disorder prediction 1 52 - -
Ssu4g1389 367 Gene3D Transferase(Phosphotransferase) domain 1 152 360 - -
Ssu4g1389 367 Pfam Protein tyrosine and serine/threonine kinase 79 352 IPR001245 GO:0004672|GO:0006468
Ssu4g1389 367 PANTHER OS03G0226300 PROTEIN 1 366 - -
Ssu4g1389 367 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 366 - -
Ssu4g1389 367 SUPERFAMILY Protein kinase-like (PK-like) 53 352 IPR011009 -
Ssu4g1389 367 ProSiteProfiles Protein kinase domain profile. 74 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1389 367 ProSitePatterns Tyrosine protein kinases specific active-site signature. 202 214 IPR008266 GO:0004672|GO:0006468
Ssu4g1389 367 ProSitePatterns Protein kinases ATP-binding region signature. 80 103 IPR017441 GO:0005524
Ssu4g1389 367 SMART tyrkin_6 74 352 IPR020635 GO:0004713|GO:0006468
Ssu4g1389 367 Gene3D Phosphorylase Kinase; domain 1 43 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1389 Ssu-Chr4 23113758 23116403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1389 65 353 Receptor kinase-like Gene Family AT4G02010 48.288 8.74e-86 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Ssu4g1389 PK_Tyr_Ser-Thr 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1389 - - gmx:100812507 688.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1389 4 23113758 23116403 Ssu4g1389 4 23113758 23116403 ECH
Ssu4g1389 4 23113758 23116403 Ssu7g2727 7 55444803 55449687 PCT