Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1383 ATGGACAACACTGAGAGAGAGACCCACGACTTCATGAACGTCGATTCTTTCTCTCAGCTCCCCTTTCTCCGCCCCGCACCACCCTCTAAAGAAAAAGCCATTCGTCTCTTCGGCCAAGAATTCTGCGACGCGCCTGACTCTACCAACGGCAACAACGTTAGAGCTTCCGAGCATAACACCAACAAggacgacaacaacaacaacaacaacaacacagaAAACGGCGAGAGCAGCCGCAGATTCGAGTGCCATTATTGCTGTAGAAACTTCCCCACTTCTCAGGCCTTGGGCGGCCACCAAAACGCGCACAAACGAGAGCGGCAGCACGCGAAACGACACCTCCACTCAGCGATGGCTCAAACTACCATCTCCGATGCCGACACGTACGGCTTCATGAACTACAGGTTCGGTTCCGCGGCAATGTCTTACTCTTACCCAACGTGGAATACAAACTCGTCAAATGCTATGGTTGGGAACACTGGTGGTGGTGGAAGGTTCCACGGAAGCTCCTATTCTCAGCAACTTCAACCCATCAATGGAAGCCCCTTGGGCTTGTCGCGAATCCCCACCGCCACTACTACCTCTCACGCCCAGAGTAACCCTATTTTCAAACGCGAACGCTCGCTGCATCCGCTGCCTTTGTTTGCCGCCGAGGAAATGGTGAACGCGAGGATGGGACCCTCGCGGGTCGGTCCCTCTGGTTCGCAAAACCGGTTTGTTTACGACCCCAAACCCAGCGTAAACGACCATGTGAGTTTGGATCTTCATCTGTAA 774 0.5168 MDNTERETHDFMNVDSFSQLPFLRPAPPSKEKAIRLFGQEFCDAPDSTNGNNVRASEHNTNKDDNNNNNNNTENGESSRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRHLHSAMAQTTISDADTYGFMNYRFGSAAMSYSYPTWNTNSSNAMVGNTGGGGRFHGSSYSQQLQPINGSPLGLSRIPTATTTSHAQSNPIFKRERSLHPLPLFAAEEMVNARMGPSRVGPSGSQNRFVYDPKPSVNDHVSLDLHL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1383 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Ssu4g1383 257 PANTHER ZINC FINGER PROTEIN GIS 1 257 IPR044291 GO:0003700|GO:0009739|GO:0010026|GO:0010090
Ssu4g1383 257 MobiDBLite consensus disorder prediction 226 245 - -
Ssu4g1383 257 SUPERFAMILY beta-beta-alpha zinc fingers 78 109 IPR036236 -
Ssu4g1383 257 PANTHER ZINC FINGER PROTEIN GIS 1 257 - -
Ssu4g1383 257 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Ssu4g1383 257 MobiDBLite consensus disorder prediction 45 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1383 Ssu-Chr4 22952649 22953422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1383 1 257 C2H2 Transcription Factor Family AT2G41940 41.901 6.04e-47 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1383 - - gmx:100788954 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1383 4 22952649 22953422 Ssu4g1383 4 22952649 22953422 ECH
Ssu4g1383 4 22952649 22953422 Ssu7g2721 7 55102788 55103612 PCT