Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1368 ATGAAGGACAAGGTGGATTCCCCTGTTGGTGTTCTTGAGGACTATCTCAAGAGCTCAGAATCAGAAACAAGTTCTTCCAAAGAACCCAGTACGGATTCTGAGTCTCAGGATAAGTCAAAACCCGGTTCTAGGTGGCATGCGTTTCTTCAATTGTTGAGGATCAAATCGAAGAAGCCAATAGCCACATTGCATCCCCTCAGTGTCCTCAAGCTCTCGAGAAGAATGAGCAGTAGCATGAGGGAGAATATAATAGATGCAGATTCGTCCTTCAACAGGTCAACCTGGAAGATCTTCACTCACCATGAGATACAAATTGCAACCAATTACTTCGCCCAAGAAAATTTTGTTGGAAAGGGTGGTTATGCTGAGGTTTACAAAGGGTGTTTGCCAAATGGTCAACTAGTGGCGATTAAACGGCTAACACGAGGAACAGAAAATGAAAGTATAGGGGACTTCTTATCAGAACTTGGCATAATGGCTCATGTAAACCACCCCAATACTGCTAAGTTAGTGGGCTATGGGGTGGAGGGAGGAATGCATTTAGTGCTTGAGTTGTCTGAAAAAGGGTGCTTAGCTTCGGTGCTTAATGGTTCCAAGGAGAAACTACCGTGGTCTATTAGGCAGAAAATAGCATTAGGAACAGCTAAGGGCATATTGTATCTTCATGAAGGTTGTCAAAGAAGAATTATCCACAGAGATATAAAAGCCGCGAATATCTTGCTTACTGAAGACTCTGAGCCGCAGATTTGTGATTTCGGGCTAGCAAAATGGCTACCAGAGAATTGGACCCATCACACCGTTTCAAAAATTGAAGGGACTTTCGGTTACCTCGCTCCTGAATACTTGCTTCATGGGATAGTGGATGAGAAAACAGATGTATATGCCTTTGGTGTGGTGCTATTAGAATTAGTCACCGGGCGGCGAGCACTTGATTATTCACAGCAAAGCCTTGTTTTGTGGGCAAAACCTTTGctgaaaaagaattatattaggGAGCTGATTGATCCTTCACTAGCCGATGACTTTGACTGTCGGCAGATTAAAGTTATGCTCTTGGCAGCTTCTTTATGCATTCAACAATCCTCTATTCGTCGTCCCTCTATGAAACAGGCACGTTCTCTtgttctttcaaaatttcaacaaaacAAAGGAAAGGGGAAGAACAACGGCTTGTTGCCGAATTCCTTGAGGATTATCTCTCTGTGCCTCAAGACTGTGTCATCGAATGCCACCACCGTTGCTTCCACCGTGCGCTCCGCCGGCGCCTCCGTCGCCGCTTCTATTTCCTCTTCTTCTGAGGATCACAAAGATCAGGTAACCTGGGCCGGTTTTGATATACTGGAGCTTGATCCATCTAACTTCAAACGCGTTCTTTTACTTGGTTATCTGAATGGATTTCAAGTTCTTGATGTGGAGGATGCCTCTGGCTTCAGTGAACTGGTCTCAAAGCGTGACAGTCCAGTTTCTTTTTTACAGATGCAGCCCTTCCCTGTAGGTTGTGATGGCCAGGAGGGATTCAGAAAGTCACACCCTTTACTGTTGGTTGTTTCTGGGGATGACACCAGCAATATAAACCAGAACAGTACCTGCTTGAGTGGATTAGGAAGGGATGGTAATGTTGAGACTCAACCTGGGAACAATGTCAACTCTTCAACAACTGTTCAGTTTTACTCCTTGAAGTCTCACTGTTATGTTCATGTTCTGAGGTTCCGATCCAACGTGTGTATGATCAGATGCAGTTCACGGATAGTAGCTGTTGGTCTTGCCACACAAATATACTGCTTTGATGCTGTGACTCTTGAGAATAAGTTCAGTGTTCTCACTTATCCTGTTCCTCAGTTAGCTGGACAAGGAACAGCTGGTGTTAATGTTGGTTATGGTCCAATGGCTGTGGGTCCAAGGTGGTTGGCATATGCTTCTAACAACCCCCTTCCCTCTAATCTAGGTTGCTTAAGCCCACAAAACTGCAGTGCTTCTCCGGGAATTAGTCCATCAACTTCTCCAAGCAGTGGTAGTTTAGTGGCTCGTTATGCAATGGAGTCCAGTAGACATTTGGCTGCTGGAATAATCAAGTACTGTCAAGAGCTACTTCCTGATGGTTCCTCTTCTCCTGTACCATCAAATTCGGGTGTGAAAGTCAATAGGGTTACAGGAATTGATGCAGATAATGCAGGAATGGTAGTCATTAAGGATTTTGTTTCCAGAATTATCATATCACAATTCAAAGCTCATACTAGTCCTATATCTGCACTATGTTTTGACCCTAGTGGGACCCTTCTGGTGACTGCATCAGTCTATGggaataacattaatatattccGGATAATGCCATCATTGACATGCAAGAGTTCAGGCATTCCAGGCTCCAACTGGAACTCTTCTCATGTACATCTTTATAAACTTCACCGTGGAATCACACCAGCTATGATTCAGGACATTTGTTTCAGTAATTTTAGTCAGTGGATTGCAATTGTCTCATCCAAGGGTACTTgtcatctttttgttttgtcaCCCTTTGGAGGTGATACTGGTTTTCGAATTATTAGTTCTCAGGGTGAAGAACCGTCCTTACTTCCAGTTTTTTCTTTGCCTTGGTGGTATACTCCAGCTTCCATTTCTTATCAGCAATCTATGCCTCCCCCAGCACCTGTTGTCCTTTCTGTGGCTAGCCGGATAAAATATAGTAGTTTTGGATGGCTTAATACTGTTCACAATTCTGCTGCGAATGTGACAGGAAAAGTTTTTGTGCCATCTGGTGCCATTGCTGCCATCTTTCATAATTCCTTATCCCACTCGCAACAGCTTGTTAACTCAAAGGCAAAACCCTTAGAGCATATATTGGTATATACACCTTCAGGTCATGTAGTTCAACATGAACTTCTGCCATCTGTTGGTTTAGAAACAAGTGATAGTGGTTTGAGAAACCAATTGCATATGCAGGAGGATGAGTTCAGAGTCAAAGTTGAACCTATTCAATGGTGGGATGTATGTAGAAGGTCAGAATGGCCAGAAAGAGGGGATCCTTGCTGCAATACCTTTGATAGACAAGGAGGTAGTGAGAGAGttcaagagaaaataggttatagtGACATccatggattggattttttggGTATAAGTGATGGGGCAGGGGAAAAGATGGTAAAATCTTCTGGTGGGAATATGCAGGAGAGGTTTCACTGGTATCTGTCTAATGCGGAGGTGCAAGTGAATTTTGGAAGGTTACCCATATGGCAAAAGTCTAAGatTTGTTTCTATACAATGAGTTGTGCGGGAGCTAGTTTCAGTGCTAGTAGGGAGTTTGAAATTGAAAAGGTCCCTGCCaatgaaattgaaataagaCGGAAGGAGTTGCTGCCTGTTTTTGACTATTTTCATAGCATCAGATCAAGCTGGAATGAGAgAGGCCTTGCTGGGGAAAgatatttaaacccttcatctCCTGTTCCCAATCAGGCTGATGACAAGGAAACTACTGATGTGACAGTTATTTGTCATTCAAAGCCAGCATCACTGAGTTCCACTGAAAGCTCTGATGGAGGTTCGTCAAGAAGAATTGAAAATCTGCTTGACTTGGATCAAGTTGCTTCTAGTTATCAAATACTTGGTGAGATATGCCTGGAAAGAATGGGAACAATCAATGTTGAGCCTTCTCTACAAAACCAGATTGTGATGGAAAGTTCATCTTGTCTGTCTGGAAACTCGAAACATGTTGATTTCAACGTTGACCATATTGGCAGTCCTATATTCCAAGGGAGAAATATAACCTCTGAAGGAAGAGATTCTACAGGTGTTGGGATTGGTGAGAACTCAGCATTGGTCCTAGAACATGCTTCAGACGAGACTGAATTTGTGGAAGTAGCCTCGTTAATGCAAAATGAAGGTGTTGGGATATCTTTCAAGGATGGCCACTGCAAAACAGAGGAGCATGATGGAAGTGACATGTTAACTGAAGTTGTAACTGATGATGTTGACAGCAGCAGTAGCCACCATGAAAGAGAGCAACTGGAGGAGGATGGGGAGAATGATGAAATGCTTGGTGGCATATTTGCCTTTTCTGAAGAAGGTTGA 4071 0.4191 MKDKVDSPVGVLEDYLKSSESETSSSKEPSTDSESQDKSKPGSRWHAFLQLLRIKSKKPIATLHPLSVLKLSRRMSSSMRENIIDADSSFNRSTWKIFTHHEIQIATNYFAQENFVGKGGYAEVYKGCLPNGQLVAIKRLTRGTENESIGDFLSELGIMAHVNHPNTAKLVGYGVEGGMHLVLELSEKGCLASVLNGSKEKLPWSIRQKIALGTAKGILYLHEGCQRRIIHRDIKAANILLTEDSEPQICDFGLAKWLPENWTHHTVSKIEGTFGYLAPEYLLHGIVDEKTDVYAFGVVLLELVTGRRALDYSQQSLVLWAKPLLKKNYIRELIDPSLADDFDCRQIKVMLLAASLCIQQSSIRRPSMKQARSLVLSKFQQNKGKGKNNGLLPNSLRIISLCLKTVSSNATTVASTVRSAGASVAASISSSSEDHKDQVTWAGFDILELDPSNFKRVLLLGYLNGFQVLDVEDASGFSELVSKRDSPVSFLQMQPFPVGCDGQEGFRKSHPLLLVVSGDDTSNINQNSTCLSGLGRDGNVETQPGNNVNSSTTVQFYSLKSHCYVHVLRFRSNVCMIRCSSRIVAVGLATQIYCFDAVTLENKFSVLTYPVPQLAGQGTAGVNVGYGPMAVGPRWLAYASNNPLPSNLGCLSPQNCSASPGISPSTSPSSGSLVARYAMESSRHLAAGIIKYCQELLPDGSSSPVPSNSGVKVNRVTGIDADNAGMVVIKDFVSRIIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSLTCKSSGIPGSNWNSSHVHLYKLHRGITPAMIQDICFSNFSQWIAIVSSKGTCHLFVLSPFGGDTGFRIISSQGEEPSLLPVFSLPWWYTPASISYQQSMPPPAPVVLSVASRIKYSSFGWLNTVHNSAANVTGKVFVPSGAIAAIFHNSLSHSQQLVNSKAKPLEHILVYTPSGHVVQHELLPSVGLETSDSGLRNQLHMQEDEFRVKVEPIQWWDVCRRSEWPERGDPCCNTFDRQGGSERVQEKIGYSDIHGLDFLGISDGAGEKMVKSSGGNMQERFHWYLSNAEVQVNFGRLPIWQKSKICFYTMSCAGASFSASREFEIEKVPANEIEIRRKELLPVFDYFHSIRSSWNERGLAGERYLNPSSPVPNQADDKETTDVTVICHSKPASLSSTESSDGGSSRRIENLLDLDQVASSYQILGEICLERMGTINVEPSLQNQIVMESSSCLSGNSKHVDFNVDHIGSPIFQGRNITSEGRDSTGVGIGENSALVLEHASDETEFVEVASLMQNEGVGISFKDGHCKTEEHDGSDMLTEVVTDDVDSSSSHHEREQLEEDGENDEMLGGIFAFSEEG 1356
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1368 1356 ProSiteProfiles Protein kinase domain profile. 110 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1368 1356 MobiDBLite consensus disorder prediction 1 42 - -
Ssu4g1368 1356 ProSitePatterns Protein kinases ATP-binding region signature. 116 138 IPR017441 GO:0005524
Ssu4g1368 1356 Gene3D Phosphorylase Kinase; domain 1 81 184 - -
Ssu4g1368 1356 Pfam Protein kinase domain 112 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1368 1356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Ssu4g1368 1356 SUPERFAMILY Protein kinase-like (PK-like) 91 373 IPR011009 -
Ssu4g1368 1356 Pfam WD domain, G-beta repeat 739 766 IPR001680 GO:0005515
Ssu4g1368 1356 SMART WD40_4 792 835 IPR001680 GO:0005515
Ssu4g1368 1356 SMART WD40_4 734 774 IPR001680 GO:0005515
Ssu4g1368 1356 Pfam Breast carcinoma amplified sequence 3 881 1120 IPR022175 -
Ssu4g1368 1356 MobiDBLite consensus disorder prediction 1321 1356 - -
Ssu4g1368 1356 SUPERFAMILY WD40 repeat-like 549 834 IPR036322 GO:0005515
Ssu4g1368 1356 Gene3D Transferase(Phosphotransferase) domain 1 187 390 - -
Ssu4g1368 1356 SMART serkin_6 110 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1368 1356 Gene3D - 669 855 IPR015943 GO:0005515
Ssu4g1368 1356 PANTHER AUTOPHAGY-RELATED PROTEIN 18H 382 1355 - -
Ssu4g1368 1356 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 382 1355 IPR045142 GO:0006914
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu4g1368 Ssu-Chr4 22580949 22610076 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1368 97 374 Trihelix Transcription Factor Family AT1G68690 40.418 4.26e-61 221
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Ssu4g1368 BCAS3 1.7e-77 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1368 - - gmx:100785780 1684.46