LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu4g1368	ATGAAGGACAAGGTGGATTCCCCTGTTGGTGTTCTTGAGGACTATCTCAAGAGCTCAGAATCAGAAACAAGTTCTTCCAAAGAACCCAGTACGGATTCTGAGTCTCAGGATAAGTCAAAACCCGGTTCTAGGTGGCATGCGTTTCTTCAATTGTTGAGGATCAAATCGAAGAAGCCAATAGCCACATTGCATCCCCTCAGTGTCCTCAAGCTCTCGAGAAGAATGAGCAGTAGCATGAGGGAGAATATAATAGATGCAGATTCGTCCTTCAACAGGTCAACCTGGAAGATCTTCACTCACCATGAGATACAAATTGCAACCAATTACTTCGCCCAAGAAAATTTTGTTGGAAAGGGTGGTTATGCTGAGGTTTACAAAGGGTGTTTGCCAAATGGTCAACTAGTGGCGATTAAACGGCTAACACGAGGAACAGAAAATGAAAGTATAGGGGACTTCTTATCAGAACTTGGCATAATGGCTCATGTAAACCACCCCAATACTGCTAAGTTAGTGGGCTATGGGGTGGAGGGAGGAATGCATTTAGTGCTTGAGTTGTCTGAAAAAGGGTGCTTAGCTTCGGTGCTTAATGGTTCCAAGGAGAAACTACCGTGGTCTATTAGGCAGAAAATAGCATTAGGAACAGCTAAGGGCATATTGTATCTTCATGAAGGTTGTCAAAGAAGAATTATCCACAGAGATATAAAAGCCGCGAATATCTTGCTTACTGAAGACTCTGAGCCGCAGATTTGTGATTTCGGGCTAGCAAAATGGCTACCAGAGAATTGGACCCATCACACCGTTTCAAAAATTGAAGGGACTTTCGGTTACCTCGCTCCTGAATACTTGCTTCATGGGATAGTGGATGAGAAAACAGATGTATATGCCTTTGGTGTGGTGCTATTAGAATTAGTCACCGGGCGGCGAGCACTTGATTATTCACAGCAAAGCCTTGTTTTGTGGGCAAAACCTTTGctgaaaaagaattatattaggGAGCTGATTGATCCTTCACTAGCCGATGACTTTGACTGTCGGCAGATTAAAGTTATGCTCTTGGCAGCTTCTTTATGCATTCAACAATCCTCTATTCGTCGTCCCTCTATGAAACAGGCACGTTCTCTtgttctttcaaaatttcaacaaaacAAAGGAAAGGGGAAGAACAACGGCTTGTTGCCGAATTCCTTGAGGATTATCTCTCTGTGCCTCAAGACTGTGTCATCGAATGCCACCACCGTTGCTTCCACCGTGCGCTCCGCCGGCGCCTCCGTCGCCGCTTCTATTTCCTCTTCTTCTGAGGATCACAAAGATCAGGTAACCTGGGCCGGTTTTGATATACTGGAGCTTGATCCATCTAACTTCAAACGCGTTCTTTTACTTGGTTATCTGAATGGATTTCAAGTTCTTGATGTGGAGGATGCCTCTGGCTTCAGTGAACTGGTCTCAAAGCGTGACAGTCCAGTTTCTTTTTTACAGATGCAGCCCTTCCCTGTAGGTTGTGATGGCCAGGAGGGATTCAGAAAGTCACACCCTTTACTGTTGGTTGTTTCTGGGGATGACACCAGCAATATAAACCAGAACAGTACCTGCTTGAGTGGATTAGGAAGGGATGGTAATGTTGAGACTCAACCTGGGAACAATGTCAACTCTTCAACAACTGTTCAGTTTTACTCCTTGAAGTCTCACTGTTATGTTCATGTTCTGAGGTTCCGATCCAACGTGTGTATGATCAGATGCAGTTCACGGATAGTAGCTGTTGGTCTTGCCACACAAATATACTGCTTTGATGCTGTGACTCTTGAGAATAAGTTCAGTGTTCTCACTTATCCTGTTCCTCAGTTAGCTGGACAAGGAACAGCTGGTGTTAATGTTGGTTATGGTCCAATGGCTGTGGGTCCAAGGTGGTTGGCATATGCTTCTAACAACCCCCTTCCCTCTAATCTAGGTTGCTTAAGCCCACAAAACTGCAGTGCTTCTCCGGGAATTAGTCCATCAACTTCTCCAAGCAGTGGTAGTTTAGTGGCTCGTTATGCAATGGAGTCCAGTAGACATTTGGCTGCTGGAATAATCAAGTACTGTCAAGAGCTACTTCCTGATGGTTCCTCTTCTCCTGTACCATCAAATTCGGGTGTGAAAGTCAATAGGGTTACAGGAATTGATGCAGATAATGCAGGAATGGTAGTCATTAAGGATTTTGTTTCCAGAATTATCATATCACAATTCAAAGCTCATACTAGTCCTATATCTGCACTATGTTTTGACCCTAGTGGGACCCTTCTGGTGACTGCATCAGTCTATGggaataacattaatatattccGGATAATGCCATCATTGACATGCAAGAGTTCAGGCATTCCAGGCTCCAACTGGAACTCTTCTCATGTACATCTTTATAAACTTCACCGTGGAATCACACCAGCTATGATTCAGGACATTTGTTTCAGTAATTTTAGTCAGTGGATTGCAATTGTCTCATCCAAGGGTACTTgtcatctttttgttttgtcaCCCTTTGGAGGTGATACTGGTTTTCGAATTATTAGTTCTCAGGGTGAAGAACCGTCCTTACTTCCAGTTTTTTCTTTGCCTTGGTGGTATACTCCAGCTTCCATTTCTTATCAGCAATCTATGCCTCCCCCAGCACCTGTTGTCCTTTCTGTGGCTAGCCGGATAAAATATAGTAGTTTTGGATGGCTTAATACTGTTCACAATTCTGCTGCGAATGTGACAGGAAAAGTTTTTGTGCCATCTGGTGCCATTGCTGCCATCTTTCATAATTCCTTATCCCACTCGCAACAGCTTGTTAACTCAAAGGCAAAACCCTTAGAGCATATATTGGTATATACACCTTCAGGTCATGTAGTTCAACATGAACTTCTGCCATCTGTTGGTTTAGAAACAAGTGATAGTGGTTTGAGAAACCAATTGCATATGCAGGAGGATGAGTTCAGAGTCAAAGTTGAACCTATTCAATGGTGGGATGTATGTAGAAGGTCAGAATGGCCAGAAAGAGGGGATCCTTGCTGCAATACCTTTGATAGACAAGGAGGTAGTGAGAGAGttcaagagaaaataggttatagtGACATccatggattggattttttggGTATAAGTGATGGGGCAGGGGAAAAGATGGTAAAATCTTCTGGTGGGAATATGCAGGAGAGGTTTCACTGGTATCTGTCTAATGCGGAGGTGCAAGTGAATTTTGGAAGGTTACCCATATGGCAAAAGTCTAAGatTTGTTTCTATACAATGAGTTGTGCGGGAGCTAGTTTCAGTGCTAGTAGGGAGTTTGAAATTGAAAAGGTCCCTGCCaatgaaattgaaataagaCGGAAGGAGTTGCTGCCTGTTTTTGACTATTTTCATAGCATCAGATCAAGCTGGAATGAGAgAGGCCTTGCTGGGGAAAgatatttaaacccttcatctCCTGTTCCCAATCAGGCTGATGACAAGGAAACTACTGATGTGACAGTTATTTGTCATTCAAAGCCAGCATCACTGAGTTCCACTGAAAGCTCTGATGGAGGTTCGTCAAGAAGAATTGAAAATCTGCTTGACTTGGATCAAGTTGCTTCTAGTTATCAAATACTTGGTGAGATATGCCTGGAAAGAATGGGAACAATCAATGTTGAGCCTTCTCTACAAAACCAGATTGTGATGGAAAGTTCATCTTGTCTGTCTGGAAACTCGAAACATGTTGATTTCAACGTTGACCATATTGGCAGTCCTATATTCCAAGGGAGAAATATAACCTCTGAAGGAAGAGATTCTACAGGTGTTGGGATTGGTGAGAACTCAGCATTGGTCCTAGAACATGCTTCAGACGAGACTGAATTTGTGGAAGTAGCCTCGTTAATGCAAAATGAAGGTGTTGGGATATCTTTCAAGGATGGCCACTGCAAAACAGAGGAGCATGATGGAAGTGACATGTTAACTGAAGTTGTAACTGATGATGTTGACAGCAGCAGTAGCCACCATGAAAGAGAGCAACTGGAGGAGGATGGGGAGAATGATGAAATGCTTGGTGGCATATTTGCCTTTTCTGAAGAAGGTTGA	4071	0.4191	MKDKVDSPVGVLEDYLKSSESETSSSKEPSTDSESQDKSKPGSRWHAFLQLLRIKSKKPIATLHPLSVLKLSRRMSSSMRENIIDADSSFNRSTWKIFTHHEIQIATNYFAQENFVGKGGYAEVYKGCLPNGQLVAIKRLTRGTENESIGDFLSELGIMAHVNHPNTAKLVGYGVEGGMHLVLELSEKGCLASVLNGSKEKLPWSIRQKIALGTAKGILYLHEGCQRRIIHRDIKAANILLTEDSEPQICDFGLAKWLPENWTHHTVSKIEGTFGYLAPEYLLHGIVDEKTDVYAFGVVLLELVTGRRALDYSQQSLVLWAKPLLKKNYIRELIDPSLADDFDCRQIKVMLLAASLCIQQSSIRRPSMKQARSLVLSKFQQNKGKGKNNGLLPNSLRIISLCLKTVSSNATTVASTVRSAGASVAASISSSSEDHKDQVTWAGFDILELDPSNFKRVLLLGYLNGFQVLDVEDASGFSELVSKRDSPVSFLQMQPFPVGCDGQEGFRKSHPLLLVVSGDDTSNINQNSTCLSGLGRDGNVETQPGNNVNSSTTVQFYSLKSHCYVHVLRFRSNVCMIRCSSRIVAVGLATQIYCFDAVTLENKFSVLTYPVPQLAGQGTAGVNVGYGPMAVGPRWLAYASNNPLPSNLGCLSPQNCSASPGISPSTSPSSGSLVARYAMESSRHLAAGIIKYCQELLPDGSSSPVPSNSGVKVNRVTGIDADNAGMVVIKDFVSRIIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSLTCKSSGIPGSNWNSSHVHLYKLHRGITPAMIQDICFSNFSQWIAIVSSKGTCHLFVLSPFGGDTGFRIISSQGEEPSLLPVFSLPWWYTPASISYQQSMPPPAPVVLSVASRIKYSSFGWLNTVHNSAANVTGKVFVPSGAIAAIFHNSLSHSQQLVNSKAKPLEHILVYTPSGHVVQHELLPSVGLETSDSGLRNQLHMQEDEFRVKVEPIQWWDVCRRSEWPERGDPCCNTFDRQGGSERVQEKIGYSDIHGLDFLGISDGAGEKMVKSSGGNMQERFHWYLSNAEVQVNFGRLPIWQKSKICFYTMSCAGASFSASREFEIEKVPANEIEIRRKELLPVFDYFHSIRSSWNERGLAGERYLNPSSPVPNQADDKETTDVTVICHSKPASLSSTESSDGGSSRRIENLLDLDQVASSYQILGEICLERMGTINVEPSLQNQIVMESSSCLSGNSKHVDFNVDHIGSPIFQGRNITSEGRDSTGVGIGENSALVLEHASDETEFVEVASLMQNEGVGISFKDGHCKTEEHDGSDMLTEVVTDDVDSSSSHHEREQLEEDGENDEMLGGIFAFSEEG	1356

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu4g1368	1356	ProSiteProfiles	Protein kinase domain profile.	110	363	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu4g1368	1356	MobiDBLite	consensus disorder prediction	1	42	-	-
	Ssu4g1368	1356	ProSitePatterns	Protein kinases ATP-binding region signature.	116	138	IPR017441	GO:0005524
	Ssu4g1368	1356	Gene3D	Phosphorylase Kinase; domain 1	81	184	-	-
	Ssu4g1368	1356	Pfam	Protein kinase domain	112	316	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu4g1368	1356	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	229	241	IPR008271	GO:0004672\|GO:0006468
	Ssu4g1368	1356	SUPERFAMILY	Protein kinase-like (PK-like)	91	373	IPR011009	-
	Ssu4g1368	1356	Pfam	WD domain, G-beta repeat	739	766	IPR001680	GO:0005515
	Ssu4g1368	1356	SMART	WD40_4	792	835	IPR001680	GO:0005515
	Ssu4g1368	1356	SMART	WD40_4	734	774	IPR001680	GO:0005515
	Ssu4g1368	1356	Pfam	Breast carcinoma amplified sequence 3	881	1120	IPR022175	-
	Ssu4g1368	1356	MobiDBLite	consensus disorder prediction	1321	1356	-	-
	Ssu4g1368	1356	SUPERFAMILY	WD40 repeat-like	549	834	IPR036322	GO:0005515
	Ssu4g1368	1356	Gene3D	Transferase(Phosphotransferase) domain 1	187	390	-	-
	Ssu4g1368	1356	SMART	serkin_6	110	377	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu4g1368	1356	Gene3D	-	669	855	IPR015943	GO:0005515
	Ssu4g1368	1356	PANTHER	AUTOPHAGY-RELATED PROTEIN 18H	382	1355	-	-
	Ssu4g1368	1356	PANTHER	BREAST CARCINOMA AMPLIFIED SEQUENCE 3	382	1355	IPR045142	GO:0006914

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu4g1368	Ssu-Chr4	22580949	22610076	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu4g1368	97	374	Trihelix Transcription Factor Family	AT1G68690	40.418	4.26e-61	221

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Ssu4g1368		BCAS3	1.7e-77	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu4g1368	-		-	gmx:100785780	1684.46