Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1367 ATGCTCAAACGCAAGTTGTCTTGTCACCAACCCCTCCACTCTGAGTCTGAGATCTCCCTCCCACCCGGAGAGAGATCACAATCCATAACTCTTTCAAAGCCATCATCACCAATGTCCCTGCCCTTTTATCTCTTCCCTTATCTTTTGCTGGCCTTCACTCTCCCAACCCCGTCCCTGGGGGCAAACGACACCGCCCCATGCCCGCTCAACATCACCGTCCTCCGAGTGGTGAGCGGCGGCGCCCGCCCCTCCATCGACTCCGGCACGCAGTGCCATTACATCCTCCAGGCCCTCCACCTCCTCCAGGCCGACTACCTCCGCCGCAGCAACCGCTTCGTGCCGCCCCTCAACTCCTCCGAGTCCTGCTGGGACGCCTTCCAATCCTTCATCGACGAATTCGACCCCAACTTCGACGTCCGCTCCTCCTGCGGCCTCCAGACCGCGTGGATCTCCCAGGGCTGCATGAACATCACCACCAAACAACAGTTCGAAAGCACTGTCCCCCTCACCGCTATTCAAGCCGTGCAAGCAAACTGTAACCAGTCGCTAGAAAACAACGCGCCCTGCGCCCTCTGCACCACAAAAATCTCCAACATGTTGTCCTACCTAACCGGAACAACCGTAGGGAACGTCACCGATTGCAGGGCCTATACCTCTATCTACGCCGCTTCTCTCTCCGATCGGTACGGAGCCACTGACCCCGGAACCGCCATGTGTCTGTTCGGCCTTGATTTTTCCTCTTCGGGCTCCGGCGGTAAGCGTCGAACCGCTGTTATTGCTGTTGTTTCCGTTTTTTGTGCGCTGGGTTTGGCTGTATTTGCTGGGGTTTGGGGTTACTTgagattgaagaagaaaaggggGGAGGTTTTGAGGGAGAAGGGTGGTGGTGGAATTGAGGTGGGTTCTGGGTTGGATTCCATGAACCAGAGTACCACTTTGATTAGGTTCACTTTTGATGAAATCAAAAAGGCTACTAGGAACTTCGCTAGGGACAACTTAATTGGGAGTGGGGGTTATGGGAATGTTTACAAAGGGGTGCTCTTGGATGGGACTCAGGTTGCGATGAAGAGGTTCAAGAATTGTTCGGTTGCGGGGGATGCTAGCTTCACTCACGAAGTGGAGGTTATTGCGAGTGTTAGGCATGTGAACCTTGTTACCTTAAGAGGTTATTGTACTGCTACGACTAATTTAGAGGGTCACCAGAGGATTATTGTCACTGATTTGATGGAAAATGGGAGTCTTTATGATCACTTATTTGGTTCTGCTAAGAAGAAACTCAGTTGGCCCGTTCGGCAAAAGATTGCTCTAGGCACCGCTAGGGGGTTGGCTTATTTGCATTACGGGGCTCAACCTTCCATCATTCATAGGGATATTAAAGCTAGTAACATTCTTCTGGACCACAACTTTGAAGCCAAGGTAGCGGATTTTGGGTTGGCGAAGTTCAACCCTGAGGGAATGACGCATATGAGCACCAGGGTGGCTGGAACTATGGGGTATGTCGCTCCTGAGTATGCCTTGTACGGACAGTTGACAGAGAGAAGTGATGTGTTCAGTTTTGGTGTTTTGCTTCTTGAGCTTTTGAGTGGGAAAAAGGCTCTTCAAACGGAAGATGATGGCCAACCCTCTGCACTCACCGACTTTGCTTGGTCTTTAGTAAGGAATGGTAGTGCTTTGGATGTTGTTGAAGATGGTTTGCCGAGCCTGGTCCACCAGAAGTTCTTGAGAAGTATGTGTTGGTTGCTGTATTATGTTCTCACCCACAGTTATATGCTAGGCCAACAATGGATCAGGTTGTTAAAATGCTGGAGACTGATGAATCGGTACCTTCATTAA 1833 0.5057 MLKRKLSCHQPLHSESEISLPPGERSQSITLSKPSSPMSLPFYLFPYLLLAFTLPTPSLGANDTAPCPLNITVLRVVSGGARPSIDSGTQCHYILQALHLLQADYLRRSNRFVPPLNSSESCWDAFQSFIDEFDPNFDVRSSCGLQTAWISQGCMNITTKQQFESTVPLTAIQAVQANCNQSLENNAPCALCTTKISNMLSYLTGTTVGNVTDCRAYTSIYAASLSDRYGATDPGTAMCLFGLDFSSSGSGGKRRTAVIAVVSVFCALGLAVFAGVWGYLRLKKKRGEVLREKGGGGIEVGSGLDSMNQSTTLIRFTFDEIKKATRNFARDNLIGSGGYGNVYKGVLLDGTQVAMKRFKNCSVAGDASFTHEVEVIASVRHVNLVTLRGYCTATTNLEGHQRIIVTDLMENGSLYDHLFGSAKKKLSWPVRQKIALGTARGLAYLHYGAQPSIIHRDIKASNILLDHNFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVLLLELLSGKKALQTEDDGQPSALTDFAWSLVRNGSALDVVEDGLPSLVHQKFLRSMCWLLYYVLTHSYMLGQQWIRLLKCWRLMNRYLH 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1367 610 Pfam SPARK 63 214 IPR043891 -
Ssu4g1367 610 Pfam Protein kinase domain 330 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1367 610 Gene3D Transferase(Phosphotransferase) domain 1 409 590 - -
Ssu4g1367 610 MobiDBLite consensus disorder prediction 1 32 - -
Ssu4g1367 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Ssu4g1367 610 PANTHER RECEPTOR-LIKE KINASE IN IN FLOWERS PROTEIN 64 575 - -
Ssu4g1367 610 ProSiteProfiles Protein kinase domain profile. 328 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1367 610 SMART serkin_6 328 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1367 610 PANTHER OS01G0253100 PROTEIN 64 575 IPR045271 GO:0004714|GO:0006468
Ssu4g1367 610 SUPERFAMILY Protein kinase-like (PK-like) 305 563 IPR011009 -
Ssu4g1367 610 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Ssu4g1367 610 Gene3D Phosphorylase Kinase; domain 1 301 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1367 Ssu-Chr4 22539451 22541283 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1367 58 566 Receptor kinase-like Gene Family AT2G48010 61.133 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Ssu4g1367 Pkinase 9.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1367 - - gmx:100786298 853.203