Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1366 ATGTCACTCTTTGTGTTCCTTGCTACCTTCTTCCTCACTTGCTTTACTATTTCCCTCTCCGTTCCATGTCCCCTCAACATCACCCTCCTCCATTCCAGGCCCTCCTTGGACTCCGACACACGCTGCCCTTACATCCTCCAAGCCCTTCGTATTCTCCAATCCGATTATCTCCGCCGAACTCGCTTCTTCTTCCCTCCACCCAACTCCTCCTTCTCGTGCTGGAACACTCTCCAATCTTTCATCAACCAATACGACATTCGCTCCTCCTGTAACCTCACTTCCTCTTCCATCTCCCAGTCATGCATGAACATCACCACCCGATCCCAATTCGAACAGTCTGTTCCTCTTTCTGCTCTCAGACCCGTCTGGACCGGTTGTAACCAGTCTCTTAACAGTGCTGTGCCTTGTGCTCTCTGCACCAACGCTTTGTCCAACTTGGATTCCTACCTCGCTGGCAAAATCGCCGATTGCAACGCTAGTGGTTTTATCTATGCCGCTTCCTTCTCCGATCTGCAAGACCCCGGAACCGTTAACTGCTTGTTCAGCCTCGATTTATCCACTTCGCCTTCCACTGGTAAGCGTCGAACCATTCTTATTGTGGTTTTTTGTGTCTTGGCCTTCTTCCTTCTAGTCTTTGGTGCCCTTTGGGCTTACTTTAGATTGAAGCAGAagcagaagaagaaaaaagatattggTAGAATTGATGAGATGGGTTTGGGTTCTGAGAGTACCACTTTGGTTAGGTTCACTTTTGACGACATTAAAAAGGCTACTAGGAACTTCGCCGGCGACAACATAATCGGGAAGGGGGGTTATGGGAATGTTTATAGAGGGGTGCTATCTGATGGGGCTCCAGTTGCGTTGAAAAGGTTCAAGAATTGTTCGGTTGCGGGGGATGCTAGCTTCACTCATGAAGTGGAGGTAATTGCGAGCGTTAGGCATGTGAACCTTGTTGCCCTTACAGGTTATTGTACTGCCACAACTAATTTAGAGGGTCACCAGAGGATTATTGTCACTGATTTGATGGAAAATGGGAGCCTTTATGATCACTTATTTGGTTCTGCTAAGAAGAAACTCAGTTGGCCCGTTCGGCAAAAGATTGCTCTAGGCACTGCTAGGGGGTTGGCTTATTTGCATTACGGGGCTCAACCTTCCATCATTCATAGGGATATTAAAGCTAGTAACATTCTTCTGGACCACAACTTTGAAGCCAAGGTAGCGGATTTTGGGTTGGCGAAGTTCAACCCTGAGGGAATGACGCATATGAGCACCGGGGTGGCTGGAACTATGGGGTATGTCGCTCCTGAGTATGCCTTGTACGGACAGTTGACAGAGAGAAGTGATGTGTTCAGTTTTGGTGTTTTGCTTCTCGAGCTTTTGAGTGGGAAAAAGGCTCTTCAAACGGAAGATGATGGCCAACCCTCTGCACTCACCGACTTTGCTTGGTCATTAGTTAGGAACGGTAAAGCTTTGGATGTTATTGAAGATGGTATGCCGGAACTTGGTCCACCACAAGTTCTTGAGAAGTATGTGTTGGTTGCTGTACTGTGTTGTCATCCACAGTTATATGCTAGACCAACAATGGATCAGGTTGTTAAAATGCTGGAGACTGATGAATCGGTACCTTCATTAATGGAAAGGCCAATCCCCTTTATTGCTGGGAGGATTGATATTGAGAAATCTGTCGGTAGTAACTAG 1698 0.4658 MSLFVFLATFFLTCFTISLSVPCPLNITLLHSRPSLDSDTRCPYILQALRILQSDYLRRTRFFFPPPNSSFSCWNTLQSFINQYDIRSSCNLTSSSISQSCMNITTRSQFEQSVPLSALRPVWTGCNQSLNSAVPCALCTNALSNLDSYLAGKIADCNASGFIYAASFSDLQDPGTVNCLFSLDLSTSPSTGKRRTILIVVFCVLAFFLLVFGALWAYFRLKQKQKKKKDIGRIDEMGLGSESTTLVRFTFDDIKKATRNFAGDNIIGKGGYGNVYRGVLSDGAPVALKRFKNCSVAGDASFTHEVEVIASVRHVNLVALTGYCTATTNLEGHQRIIVTDLMENGSLYDHLFGSAKKKLSWPVRQKIALGTARGLAYLHYGAQPSIIHRDIKASNILLDHNFEAKVADFGLAKFNPEGMTHMSTGVAGTMGYVAPEYALYGQLTERSDVFSFGVLLLELLSGKKALQTEDDGQPSALTDFAWSLVRNGKALDVIEDGMPELGPPQVLEKYVLVAVLCCHPQLYARPTMDQVVKMLETDESVPSLMERPIPFIAGRIDIEKSVGSN 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1366 565 SMART serkin_6 261 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1366 565 ProSitePatterns Protein kinases ATP-binding region signature. 267 289 IPR017441 GO:0005524
Ssu4g1366 565 Pfam SPARK 21 153 IPR043891 -
Ssu4g1366 565 SUPERFAMILY Protein kinase-like (PK-like) 241 536 IPR011009 -
Ssu4g1366 565 PANTHER OS01G0253100 PROTEIN 14 564 IPR045271 GO:0004714|GO:0006468
Ssu4g1366 565 PANTHER RECEPTOR-LIKE KINASE IN IN FLOWERS PROTEIN 14 564 - -
Ssu4g1366 565 ProSiteProfiles Protein kinase domain profile. 261 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1366 565 Gene3D Transferase(Phosphotransferase) domain 1 342 545 - -
Ssu4g1366 565 Pfam Protein tyrosine and serine/threonine kinase 265 535 IPR001245 GO:0004672|GO:0006468
Ssu4g1366 565 CDD STKc_IRAK 267 536 - -
Ssu4g1366 565 Gene3D Phosphorylase Kinase; domain 1 221 340 - -
Ssu4g1366 565 ProSitePatterns Serine/Threonine protein kinases active-site signature. 386 398 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1366 Ssu-Chr4 22515654 22517351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1366 10 560 Receptor kinase-like Gene Family AT2G48010 59.652 0.0 680
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Ssu4g1366 PK_Tyr_Ser-Thr 2.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1366 - - gmx:100819980 835.099
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1366 4 22515654 22517351 Ssu7g2063 7 40867196 40869064 PCT