Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1356 ATGACGATGATTCATTGGGGTGGAGTCAGTTGCTGTTTGAGTGCAGCTGCTCTGTACCTTCTTGGGAGAAGCATTGGCGGGGATGTGGAAATTCTTAAATCTATTACCCCAGTCAATCAGCTAAAAGAACTAGCCCAACTGTTAGATGCTGAAATTTTGCCCTTGGTCATTGCAATTTCTGGAAGAGTTGGCTCTGAAAGCCCAATTAACTGCGAGTTAAGTGGTTTAAGGGGTGTAATAGTTGAAGAAATGGCAGAACAACATTATGTTAAAAATGACAGTAAAGGTTCTAGGATACAAGGTTCTGCTTCAATGCCATTCATGAGTAAAGAAGTTCCTTGGTATCTGGAAGATGCAACTGGTCGTGTGCATGTGGTTGGAGCTCGGGATGCCATGGATTTTGTATTACCTGTTGGAAGTGAGGTATTTGAAGGGTCAGGTCAATCACTTGTAGGTGGAACCTTGGATTATTTCCATGGTATCAAGaTGCTTGGTATCAAGAGAATTGAACGAGTACTTCCAATCGGCACCTCCTTGACTGTTGTTGGAGAGGCTGCTAAAGATGACACTGGAACCATTAGAATTCAGCGACCCTATAAAGGGCCATTTTATGTCTCTCGACAAACAATCGATCAGCTCATTGCAAGTCTTGGGAAACAGGCAAGGTGGTACAAGTGTGCATCTATGGGTTTGACAATATTTGGTGTTTATGTAATAGCTAAGCATCTTATTCAGCACATCTTGGAAAGACGGCGTCGTTATAAACTGCAAAAAAGGGTTCTTGCTGCAGCTGCTAAGAGGTCAGGACAAGATAATGAAGGTGAAAAGGCTGACACCTTACCAGATGGTAGTAAAAGAATGCCAGATTTGTGTGTAATATGCCTAGAGCAGGAATATAATGCTGTTTTTGTCCCGTGCGGGCATATGTGCTGCTGTACAACTTGTTCTTCACACTTAACTATTTGTCCTCTTTGCCGGGGACTGATAGAGCTGGTAGTTAAAACTTACTATCATTGA 1017 0.4248 MTMIHWGGVSCCLSAAALYLLGRSIGGDVEILKSITPVNQLKELAQLLDAEILPLVIAISGRVGSESPINCELSGLRGVIVEEMAEQHYVKNDSKGSRIQGSASMPFMSKEVPWYLEDATGRVHVVGARDAMDFVLPVGSEVFEGSGQSLVGGTLDYFHGIKMLGIKRIERVLPIGTSLTVVGEAAKDDTGTIRIQRPYKGPFYVSRQTIDQLIASLGKQARWYKCASMGLTIFGVYVIAKHLIQHILERRRRYKLQKRVLAAAAKRSGQDNEGEKADTLPDGSKRMPDLCVICLEQEYNAVFVPCGHMCCCTTCSSHLTICPLCRGLIELVVKTYYH 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1356 338 CDD RING-HC_LRSAM1 290 329 - -
Ssu4g1356 338 ProSiteProfiles Zinc finger RING-type profile. 291 326 IPR001841 -
Ssu4g1356 338 Pfam Zinc finger, C3HC4 type (RING finger) 289 330 - -
Ssu4g1356 338 SUPERFAMILY RING/U-box 290 332 - -
Ssu4g1356 338 Pfam E3 Ubiquitin ligase 88 235 IPR022170 GO:0004842|GO:0006996|GO:0016567
Ssu4g1356 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 337 IPR013083 -
Ssu4g1356 338 PANTHER - 3 305 IPR044231 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1356 Ssu-Chr4 22402559 22408231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1356 3 274 C3H Transcription Factor Family AT1G63900 66.788 5.08e-128 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1356 K15688 - gmx:100800734 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1356 4 22402559 22408231 Ssu4g1356 4 22402559 22408231 ECH