Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1354 ATGGCTACTCTCGTTCTCAGAAATTGCTCTTCCACTTCCCGGCGCCTCTTCCCCTTAACCTCTCAAATCCACACTTCCTTCTCTCGTTCTCCTCTCTCTCCTCCCGTTTTCCCCAATGACTCCACCTCCTCTTCTTCCACTTCCAGCGCCTGGTGGAGATCCATGGCCACCTTCACCAGAACGAAACCTCACGTTAATGTCGGAACTATTGGACACGTGGATCACGGGAAGACCACGCTTACCGCGGCAATCACCAAGGTGCTGGCGGATGAAGGGAAAGCCAAGGCCGTGGCGTTCGATGAAATCGATAAGGCTCCtgaagagaagaagagaggaATCACCATTGCAACGGCACATGTGGAGTATGAGACCACGAAAAGACATTATGCACATGTGGACTGCCCTGGTCATGCAGATTATGTTAAAAATATGATTACAGGAGCTGCCCAGATGGATGGTGGTATACTTGTTGTATCTGCACCTGATGGACCAATGCCTCAAACCAAGGAGCACATTCTTCTTGCTCGCCAAGTAGATGTATACATTCCTGACCCTGTTCGCCAACTTGACAAGCCTTTCCTGATGCCCATTGAAGATGTATTCTCAATTCAGGGACGAGGAACAGTAGCCACTGGCCGTGTTGAACAAGGGGTCATTAAAGTTGGTGATGAAGTGGAGGTGTTGGGTCTAATGCAGGGTGGTCCTCTGAAAACAACAGTAACTGGAGTTGAGATGTTCAAGAAGATTTTGGATCAAGGACAAGCTGGTGATAATGTTGGTCTTCTTCTCCGTGGTCTGAAGCGTGAAGATATTCAACGTGGTCAGGTGATTGCCAAGCCTGGTTCTGTAAAAACATCCAAGAAATTTGAGgcagagatatatgtactcacAAAGGACGAGGGTGGGCGACACACTGCTTTCTTCTCTAACTATAGACCTCAGTTTTACTTGAGGACTGCTGATGTCACTGGAAAAGTAGAGTTGCctgaaaatgttaaaatggtTATGCCTGGCGACAATGTTACTGCCGTGTTCGAATTGATTTCACCAGTTCCACTTGAAGCAGGACAAAGATTTGCCTTGAGAGAAGGCGGCAGAACAGTTGGTGCAGGTGTGGTGTCAAAAGTACTGAGCTAG 1137 0.4591 MATLVLRNCSSTSRRLFPLTSQIHTSFSRSPLSPPVFPNDSTSSSSTSSAWWRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLADEGKAKAVAFDEIDKAPEEKKRGITIATAHVEYETTKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVDVYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGVIKVGDEVEVLGLMQGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGQVIAKPGSVKTSKKFEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTADVTGKVELPENVKMVMPGDNVTAVFELISPVPLEAGQRFALREGGRTVGAGVVSKVLS 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1354 378 PANTHER ELONGATION FACTOR TU 178 377 - -
Ssu4g1354 378 Gene3D Translation factors 188 318 - -
Ssu4g1354 378 Gene3D Translation factors 322 377 - -
Ssu4g1354 378 Pfam Elongation factor Tu domain 2 207 277 IPR004161 GO:0005525
Ssu4g1354 378 Gene3D - 54 183 IPR027417 -
Ssu4g1354 378 Pfam Elongation factor Tu GTP binding domain 62 181 IPR000795 GO:0003924|GO:0005525
Ssu4g1354 378 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 103 118 IPR031157 -
Ssu4g1354 378 PANTHER ELONGATION FACTOR TU-RELATED 42 180 - -
Ssu4g1354 378 PANTHER ELONGATION FACTOR TU-RELATED 178 377 - -
Ssu4g1354 378 MobiDBLite consensus disorder prediction 26 47 - -
Ssu4g1354 378 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 62 236 IPR000795 GO:0003924|GO:0005525
Ssu4g1354 378 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 208 IPR027417 -
Ssu4g1354 378 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 287 377 IPR009001 -
Ssu4g1354 378 PANTHER ELONGATION FACTOR TU 42 180 - -
Ssu4g1354 378 CDD EFTU_III 284 373 - -
Ssu4g1354 378 SUPERFAMILY Translation proteins 187 283 IPR009000 -
Ssu4g1354 378 CDD EFTU_II 193 281 IPR033720 -
Ssu4g1354 378 Pfam Elongation factor Tu C-terminal domain 282 376 IPR004160 -
Ssu4g1354 378 PRINTS GTP-binding elongation factor signature 146 157 IPR000795 GO:0003924|GO:0005525
Ssu4g1354 378 PRINTS GTP-binding elongation factor signature 110 118 IPR000795 GO:0003924|GO:0005525
Ssu4g1354 378 PRINTS GTP-binding elongation factor signature 66 79 IPR000795 GO:0003924|GO:0005525
Ssu4g1354 378 PRINTS GTP-binding elongation factor signature 130 140 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1354 Ssu-Chr4 22381777 22385538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1354 60 175 Eukaryotic Initiation Factors Gene Family AT1G07930 36.232 1.26e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1354 K02358 - cpap:110821288 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1354 4 22381777 22385538 Ssu4g1354 4 22381777 22385538 ECH