Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1337 ATGATTGTTCACTTTCTTGTGCGTACAGAATCTATTTCTGTTACTGAGgcaataaataaatttgcttGGGCACGTCACCCAGGAATTTACAAGCAGGACTACATTGACGCCCTGTACATGTTTTATCATGAAAAGAAGCCTGAAGATCTTGTTTGTCCTCAAACTCCTGAATGGAAGAGACCTTCTGATCCTGATTTTCGTGGCCCAGCTGTCCCAGCTGTGGACAATTATGGACACATTCATGAACAGGAGAATATTGTGAGGAATGAAGTATTGACAAATGATGATGTTTTGGGAGATCCAATTCCTCCAAACCAGCTGCGTGCAATGCAAGAAGTTTGTTATCAACTGCTCAAGTTGGGCACAGGGGGAAGAGGACGTTCGCAGTTTCCTGGATCGCACCCTGTTTCTCTAAACAGGGACAATCTGCAACTCTTAAGACAACGATATTACTATGCCACATGGAAAGCTGATGGGACACGATATATGATGCTGATTACTTGCGATGGATGTTATCTGATTGACagaaaatttcttttccaaAGGATCAATATGCGATTTCCTTGCAGATATTCAAATGGGGGTACACCTGAGAGGAATCACCACTACACATTACTTGATGGGGAGATGATTATTGACACAGATCCACACACACAGAAGCAAGAGAGAAGATACCTCATTTATGATTTGATGGCAATCAATCAAGTCTCTTTGACAGCGCTGCCGTTCTATGAACGGTGGAAATTGCTGGAGAAAGAAGTAATTGAACCTCGTAACATGGAACGTGAGGGCCTTTCCAAGAGTATAAATCCTTATTACAGATATGACTTGGAACCATTTAGTGTGAGGAGGAAGGGTTTCTGGTTACTATCTACTGTGTCAAAGCTCCTTCATAAATTCATTCCACAACTCTCGCATTCATCAGATGGTCTTGTATTCCAGGGTTGGGATGATCCATACGTCCCTCGCACACATGAAGGTCTTCTGAAGTGGAAATACCCTGAGATGAACTCTGTTGATTTCCTCTGCGAGGTGGGAGCTGGTGATCGTCCCTTGCTTTTTCTGTTTGAACGTGGAAGGAAGAAGTTAATGGAagagaatgttatttttaaagATGCATCAGACATTTCTTCCTATTCTGGGAAGATCATTGAGTGCTACTATGATTCTGCGGAGCATCACTGGGTCTGTATGCGGATCAGAATAGACAAAGCAACTCCAAATGATATCAATACCTATAGAAAGGTAATGCGAAGCATAAAGGATAACATCACAGAAGGTGTCTTATTGAATGAGATCAATGAGATCATTTGCCTACCCTTGTATGCAGACAGAATACAAAGGGATATCAAAGCTCACCAGCATATGGTCTCTTCACGGCGCAAGTGA 1389 0.4118 MIVHFLVRTESISVTEAINKFAWARHPGIYKQDYIDALYMFYHEKKPEDLVCPQTPEWKRPSDPDFRGPAVPAVDNYGHIHEQENIVRNEVLTNDDVLGDPIPPNQLRAMQEVCYQLLKLGTGGRGRSQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITCDGCYLIDRKFLFQRINMRFPCRYSNGGTPERNHHYTLLDGEMIIDTDPHTQKQERRYLIYDLMAINQVSLTALPFYERWKLLEKEVIEPRNMEREGLSKSINPYYRYDLEPFSVRRKGFWLLSTVSKLLHKFIPQLSHSSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLCEVGAGDRPLLFLFERGRKKLMEENVIFKDASDISSYSGKIIECYYDSAEHHWVCMRIRIDKATPNDINTYRKVMRSIKDNITEGVLLNEINEIICLPLYADRIQRDIKAHQHMVSSRRK 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1337 462 Pfam mRNA capping enzyme, C-terminal domain 368 429 IPR013846 -
Ssu4g1337 462 SUPERFAMILY Nucleic acid-binding proteins 335 447 IPR012340 -
Ssu4g1337 462 PANTHER MRNA-CAPPING ENZYME-LIKE 1 462 - -
Ssu4g1337 462 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 111 333 - -
Ssu4g1337 462 PANTHER MRNA-CAPPING ENZYME 1 462 - -
Ssu4g1337 462 Gene3D DNA ligase/mRNA capping enzyme 93 330 - -
Ssu4g1337 462 Gene3D - 331 438 IPR012340 -
Ssu4g1337 462 Gene3D Protein tyrosine phosphatase superfamily 1 68 IPR029021 -
Ssu4g1337 462 CDD Adenylation_mRNA_capping 105 333 IPR001339 GO:0004484|GO:0005524|GO:0006370
Ssu4g1337 462 PIRSF mRNA_capping_HCE 1 462 IPR017074 GO:0004484|GO:0006370|GO:0140818
Ssu4g1337 462 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 1 60 IPR029021 -
Ssu4g1337 462 Pfam mRNA capping enzyme, catalytic domain 134 332 IPR001339 GO:0004484|GO:0005524|GO:0006370
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1337 Ssu-Chr4 22099149 22106343 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1337 1 452 Protein tyrosine phosphatase (PTP) family AT3G09100 63.913 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1337 K13917 - gmx:100778292 895.575