Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1336 ATGAGCTATCACATGAATAATGAAGATACACGCAGAGGTTTGAAAAGAAAGCCCCCACAGATGGAACGGGGGCAAGAACAGAGATCTTACAATATGAATTCTAGACCTTATGATGGGAACATGGTTCCTGATGGTTGGTTAGGCTGCCCAGCGCATGGGCAAGAACTAGGATGCATAATCCCTTCAAAGGTTCCACTTGGTGAGTCCTTCAATGATTACATTCCAAGTCAAAAATATACTCCCAAGCAAGCGATTCTTCAACAAAGAGTCTTAGGTAGAGAACTTGGTTTAGTGATTGATCTGACAAATACTACTCGTTACTATCATGTGTCAGATTGGACAAAAGAAGGGATTGGTCATGTCAAgATAAGATGCAAAGGAAGAGATGCTGTACCTGATGATGAAtctgtaaaaaaattttgtgaTGAGATATTCATTTTAGGTTCTGGATTTTTGCTCCCAAAGAACAAATGCAAAGAAATATATACTTGTACATTGTACACATGGGCATAA 513 0.3801 MSYHMNNEDTRRGLKRKPPQMERGQEQRSYNMNSRPYDGNMVPDGWLGCPAHGQELGCIIPSKVPLGESFNDYIPSQKYTPKQAILQQRVLGRELGLVIDLTNTTRYYHVSDWTKEGIGHVKIRCKGRDAVPDDESVKKFCDEIFILGSGFLLPKNKCKEIYTCTLYTWA 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1336 170 MobiDBLite consensus disorder prediction 8 23 - -
Ssu4g1336 170 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 42 144 IPR029021 -
Ssu4g1336 170 Gene3D Protein tyrosine phosphatase superfamily 17 161 IPR029021 -
Ssu4g1336 170 PANTHER MRNA-CAPPING ENZYME 4 145 - -
Ssu4g1336 170 PANTHER MRNA-CAPPING ENZYME-LIKE 4 145 - -
Ssu4g1336 170 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1336 Ssu-Chr4 22095533 22099135 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1336 25 148 Protein tyrosine phosphatase (PTP) family AT3G09100 55.118 9.41e-42 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1336 K13917 - gmx:100778292 266.544