Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1329 ATGGCTGCACCGCCAAATAGCAGGCTTCAAACCATGTTGCGGGCTGCGGTGCAATCGGTTCAGTGGACTTACAGCCTCTTCTGGCAACTTTGTCCACAACAAGGGATTCTGACGTGGGGTGATGGATACTACAACGGAGCAATTAAGACTCGGAAGACAGTTCAAGCAATGGAAGTTACCACTGAGGAAGCGTCTCTCCAAAGAAGCGAACAACTTAGAGAGTTATATGAATCGTTGTCTGCCGGGGAGACAAACGCGCAAACTCGAAGGCCATGTGCTGCCTTGTCGCCTGAGGATCTAACGGAATCTGAATGGTTCTATTTGTTGTGTGTCTCATTCTCCTTTCATCCTGGTGTCGGGTTGCCTGGAACGGCATATGCAAGGAGGCAGCATTTATGGCTCACTGGTGCAAACGAAGTAGACAGCAAAACATTTTCCAGAGCTATTCTTGCCAAGAGTGCTCATATACAGACAGTGGTGTGCATTCCTGTGTTGGAGGGCGTCGTTGAGTTGGGCACCACCGACAAGatcgAAGAAGACCTTAATTTCATCCAACACATAAAGAGCTTCTTCATAGATCAGCACCCTCCAATGCCAAAGCCTGCATTATCAGAGCACTCCACTTCCAACCCCACTTCTTCATACGCTGTCGCTGCCACTGTCGCACCCAATATTCCCAACCAAAACGACATGAACGTCGTCAACATTGATAAAGTAGAAGATAAGTTGAATTCCGAAGCAGAAGCAGTTCGTAACAACAGTTTCCTACCAAGCGAGCTAATGGAGCTGGACACGTTGGGGGAATTCAGAGTTGAATCACCTGGAGATGGGTCCAACCACTTGGATTCGTTCCCCACAGAGGAGTCAATGGCACTGTGTTCAGCGGGGTTAGAGCACCTTCAAATTCAACTTCCAGCAGCTTCAGTAAATCCTCCCTCAGAAAACCTAGCACAAGGCGACTCGGACACCCACTACTCTCAAACGGTGTCCAGCGTCCTTCAAAAGAACTCCGGGTGGTGGCCGGACTCTCCCTCCGTCAGCCACCTCACCGATTCCTTCCAATCAGCTTTCAACAAATGGAGCTCCGGCGCCGACGACTACCGCCACCACTTTCACGTGACGGTGGCCGACGTCACCTCCCAGTGGCTCCTCAAGTACATTCTGTTCAGCGTCCCTTACTTGCACGCCACCCGGGTGAAGGGCAAGGGAGCGCCGGCGTACGAGACCAGCCACGTGATGGCGGAGCGCCGGCGAAGGGAGAAGCTCAATGAGAGGTTTCTCGTCCTGAGATCGATGGTGCCTTTCGTGACCAGAATGGACAAGGCGTCCATTCTGGGAGACACCATCGAATACATCAAACAGCTGCGCGAGAAGATCGAGATCCTCGAGGCGCGTGACTGCCACGCGGGGAAGAGGCGGGTGAGGGAGGTGGAGGTTTCGATCATAGAGAGCGACGCGCTGTTGGAGGTGGAGTGCGTGCACAGGGAAGGGTTGTTGCTGGATGTGATGAGCATGTTAAGGGAGTTAGGGGTGGAAGTGATAACGGCGCAGTCTTGGGTTAAGGATAATGGAGTGTTTGTGGCGGAGATGAGGGCCAAGGTGAAGGAAAATGGTAACGGGACAAAGGCTAGCATTGTGGAAGTGAAGAAGGCCCTTAACCAGATTATACCCCGTCATGAGCCCTACACACTTGCTTCCACTGAGCCCTACACACTTGCTTCCAACGAGCCCTACATAACACTTGCTTCCAGTGATCATTTTTAA 1764 0.5187 MAAPPNSRLQTMLRAAVQSVQWTYSLFWQLCPQQGILTWGDGYYNGAIKTRKTVQAMEVTTEEASLQRSEQLRELYESLSAGETNAQTRRPCAALSPEDLTESEWFYLLCVSFSFHPGVGLPGTAYARRQHLWLTGANEVDSKTFSRAILAKSAHIQTVVCIPVLEGVVELGTTDKIEEDLNFIQHIKSFFIDQHPPMPKPALSEHSTSNPTSSYAVAATVAPNIPNQNDMNVVNIDKVEDKLNSEAEAVRNNSFLPSELMELDTLGEFRVESPGDGSNHLDSFPTEESMALCSAGLEHLQIQLPAASVNPPSENLAQGDSDTHYSQTVSSVLQKNSGWWPDSPSVSHLTDSFQSAFNKWSSGADDYRHHFHVTVADVTSQWLLKYILFSVPYLHATRVKGKGAPAYETSHVMAERRRREKLNERFLVLRSMVPFVTRMDKASILGDTIEYIKQLREKIEILEARDCHAGKRRVREVEVSIIESDALLEVECVHREGLLLDVMSMLRELGVEVITAQSWVKDNGVFVAEMRAKVKENGNGTKASIVEVKKALNQIIPRHEPYTLASTEPYTLASNEPYITLASSDHF 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1329 587 Gene3D - 405 464 IPR036638 GO:0046983
Ssu4g1329 587 Coils Coil 445 465 - -
Ssu4g1329 587 PANTHER TRANSCRIPTION FACTOR TT8 8 557 - -
Ssu4g1329 587 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 191 IPR025610 -
Ssu4g1329 587 Pfam Helix-loop-helix DNA-binding domain 409 456 IPR011598 GO:0046983
Ssu4g1329 587 SMART finulus 412 461 IPR011598 GO:0046983
Ssu4g1329 587 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 406 455 IPR011598 GO:0046983
Ssu4g1329 587 PANTHER TRANSCRIPTION FACTOR TT8 8 557 - -
Ssu4g1329 587 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 406 465 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1329 Ssu-Chr4 21944961 21963601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1329 1 556 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 46.737 1.15e-155 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu4g1329 bHLH-MYC_N 6.4e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1329 - - gmx:100780422 903.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1329 4 21944961 21963601 Ssu4g1329 4 21944961 21963601 ECH