Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1318 ATGGAAAACCGTCACCCCGCCGTTAGACGAAGCTTGAAGCGCAAGCTCGAACGAGACTTAACTGAAGACCAAACATATCCCAAGGTGCAGAGCCTCGCTTCTCAACAACATCACCCAAATATCTCTGCAAAGATTCTCCAACAAGTTTCTCTCCTCAATTCCGCTCTTTCACCGTCCGCCTCTGATCGTGCCGCAGTTAAGAGCGCTGTCCACATCCTGTCTGAACTCGCCACAAACGAGGATCTCGTGGATACTATACTGAACTTTGGTGCTGTCCCTGCTCTGGTGAGACATCTTCAAGCCCAAGATGCACTAAAAGATGATGGTGTGGCCCCAGATGCACTGAAAGATGGCAGTGACAGTGATACTAAACATTACCGGCTTGAAGTGGCAAAAGGATGTGCGCTTGCTCTTGAGCTTCTCGCCATTCAACCAGAGCATCAGCAACTCATTACAGATGCTGGAGCCCTGCCCTGTCTTGTAGATTTGTTAAGGAGGCACAAGATCAGTACCACTTCTCAATCACTTATTGATCTTCTAAGGAGGGTAGCTGGTGCAATAACCAGCCTTGCCCATGAAAATACAGACATTAAGACCCTTGTCagGAAGGAAGGGGGTATACCTCCTCTTGTTGAATTGCTTGAATTCAATGACATAAAGGTACAGAGAGCAGCTGCACGGGCCTTGCGAACTCTTGCATTTAAAAATGATGGCAATAAAAATCAGATTGTTGAATGCAATGCATTACCAACTCTTGTACTAATGCTTCGATCAGAGGATCCTAAAATACATTACGAGGCGGTTGGTGTGATTGGAAATCTGGTCCACTCTTCACCAAATATTAAGAAAGACGTTCTTCTAGCTGGTGCTTTACAACCTGTCATTAGTTCACTTAGTTCCTGCTGTTCAGAGACCCAAAGAGAAGCAGCCCTTTTACTTGGTCAGTTTGCTGCTACAGATTCAGATTGCAAGGTTCATATTGGCCAAAGAGGGGCTATTCCACCATTAGTTGACATGCTTAAGTCTCCAGATGCTGAGCTTCGGGAAATGTCAACTTTTGCACTTGGGAGGTTGGCACAGGACATTGTTGCAGATATTATTAAGGCTGGAGGTTTTCAAAAACTGAAGGGTGGATATTTCAAAACTCAACAAACTAAAGAGTGTGTAGCAAAGACGTTAAAAAGATTAGAGGAGAAGACGCCAGGGCGAGTATTAAAACACCTAATATATCTTATGCGCTTTGCGGAAGAAGGCGTTCAAAGACGTGTAGCTATTGCTCTTGCTCATTTATGTTCTCCTCATGATCGTAAAACTATATTTGTCGACAATAATGGATTAAAATTGCTGCTGGATATTCTTAAATCTCCAATCATAAAGCAGAAGGGCAATGCTTCAGCGGCTCTTCACAAATTGGCTGCCAAAGCCAGTTCTTCTGTCTCTGTTTTTGAcgttgctcctccatcaccaacTCCCCAGATGTACTTGGGCGAGGAATTTGTAAACAATTCTAAACTTTCTGACGTCACATTCCTGGTTGAAGGTAGAAGTTTTTATGCTCATAGAGATTGTTTACTTTCTTCAGATATATTTCGTGCAATGTTTGATGGCGGTTATAGGGAAAGGGAAGCAAAACATATAGTGATTCCAAATATTAAATGGGATGTCTTTGAATTGATGATGAGATTTATATACACTGGAACAGTAGATGTCAATTTGGATATTGCTCAGGACCTCCTCAGAGCTGCAGATCAGTATCTTCTGGATGGCCTTAAGCGTATCTGTGAATATGCTATTGTTCAGGATATTTCTGTGGAAAATATTTCTCTAATGTACAAGATGTCAGAGGCTTTCAATGCTACTACATTAAAACATGCATGCATACTGTTTATGCTGGAGAAATTTGATAAACTGAGCTCCAAATCATGGTATTATCCCCTGGTTCGTCGCATTTTACCAGACATACGTATGTTCTTCTCAACTTTAATTGTCAAGTCTCATCCAGCTGATTCGTGA 2013 0.4178 MENRHPAVRRSLKRKLERDLTEDQTYPKVQSLASQQHHPNISAKILQQVSLLNSALSPSASDRAAVKSAVHILSELATNEDLVDTILNFGAVPALVRHLQAQDALKDDGVAPDALKDGSDSDTKHYRLEVAKGCALALELLAIQPEHQQLITDAGALPCLVDLLRRHKISTTSQSLIDLLRRVAGAITSLAHENTDIKTLVRKEGGIPPLVELLEFNDIKVQRAAARALRTLAFKNDGNKNQIVECNALPTLVLMLRSEDPKIHYEAVGVIGNLVHSSPNIKKDVLLAGALQPVISSLSSCCSETQREAALLLGQFAATDSDCKVHIGQRGAIPPLVDMLKSPDAELREMSTFALGRLAQDIVADIIKAGGFQKLKGGYFKTQQTKECVAKTLKRLEEKTPGRVLKHLIYLMRFAEEGVQRRVAIALAHLCSPHDRKTIFVDNNGLKLLLDILKSPIIKQKGNASAALHKLAAKASSSVSVFDVAPPSPTPQMYLGEEFVNNSKLSDVTFLVEGRSFYAHRDCLLSSDIFRAMFDGGYREREAKHIVIPNIKWDVFELMMRFIYTGTVDVNLDIAQDLLRAADQYLLDGLKRICEYAIVQDISVENISLMYKMSEAFNATTLKHACILFMLEKFDKLSSKSWYYPLVRRILPDIRMFFSTLIVKSHPADS 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1318 670 SUPERFAMILY POZ domain 497 600 IPR011333 -
Ssu4g1318 670 SMART arm_5 79 143 IPR000225 GO:0005515
Ssu4g1318 670 SMART arm_5 433 473 IPR000225 GO:0005515
Ssu4g1318 670 SMART arm_5 278 318 IPR000225 GO:0005515
Ssu4g1318 670 SMART arm_5 236 276 IPR000225 GO:0005515
Ssu4g1318 670 SMART arm_5 194 234 IPR000225 GO:0005515
Ssu4g1318 670 SMART arm_5 144 192 IPR000225 GO:0005515
Ssu4g1318 670 SMART arm_5 320 360 IPR000225 GO:0005515
Ssu4g1318 670 Gene3D - 31 170 IPR011989 -
Ssu4g1318 670 SMART BTB_4 506 602 IPR000210 GO:0005515
Ssu4g1318 670 MobiDBLite consensus disorder prediction 1 37 - -
Ssu4g1318 670 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 331 359 IPR000225 GO:0005515
Ssu4g1318 670 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 155 205 IPR000225 GO:0005515
Ssu4g1318 670 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 1 361 - -
Ssu4g1318 670 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 361 670 - -
Ssu4g1318 670 Pfam Armadillo/beta-catenin-like repeat 320 359 IPR000225 GO:0005515
Ssu4g1318 670 Pfam Armadillo/beta-catenin-like repeat 196 233 IPR000225 GO:0005515
Ssu4g1318 670 Pfam Armadillo/beta-catenin-like repeat 236 275 IPR000225 GO:0005515
Ssu4g1318 670 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 361 670 IPR044282 -
Ssu4g1318 670 SUPERFAMILY ARM repeat 34 475 IPR016024 -
Ssu4g1318 670 Pfam BTB/POZ domain 499 600 IPR000210 GO:0005515
Ssu4g1318 670 Gene3D Potassium Channel Kv1.1; Chain A 482 631 IPR011333 -
Ssu4g1318 670 ProSiteProfiles BTB domain profile. 506 572 IPR000210 GO:0005515
Ssu4g1318 670 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 361 IPR044282 -
Ssu4g1318 670 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 205 240 IPR000225 GO:0005515
Ssu4g1318 670 MobiDBLite consensus disorder prediction 1 24 - -
Ssu4g1318 670 Gene3D - 171 300 IPR011989 -
Ssu4g1318 670 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 247 289 IPR000225 GO:0005515
Ssu4g1318 670 Gene3D - 301 481 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1318 Ssu-Chr4 21727175 21753871 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1318 194 487 U-box Gene Family AT5G67340 26.000 6.09e-13 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Ssu4g1318 BTB 7.8e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1318 - - nta:107776872 768.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1318 4 21727175 21753871 Ssu4g1318 4 21727175 21753871 ECH