Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1306 ATGGAGTCAGTAGGATGTGAAAAGATAGCGAAACAGCTCTCAGCTGCAGGGTGGACAGCTTTCTTTACACCTGGcaaacaaaattacaaagacGCGGCATATCTTAGTCCAGATGGAAAGGCTCACTGGTCAATCACCTTGGCTTACAATAGGCTTAAACAGCGTTATGAAGCTGGTGATGGTGAAGGCGAAGTGTATGAACCCGGTTTCCGATTAACACCAGTACCAGAAGAGGATATCAAGATTGTAACTGAGGGAATGGACAAGGAAGGAAAAGGTCAAGAAGTGGTGCGTGTGGATAGAGTGCATCAAAAAGTGGTGCAACAGaacaagaaaaacaagaagCTAAATGAGCCGTGCCCTGGAAAACGAACTGTGCTTTCCTGGATGGTTGATATGGGAGCAATCCAGCCACGTGAGAGGGTTTGCTATTTGGATCACCAAAGGAATCGTGCATTACTGTGTGGTGTCGTCGCTGGAGGATGCATTCGGTGTGACTGCTGTTTTCAAAGTGTGTCCGTTTCGGAGTTTGAAGCTCATTCTAGAAGCCTAGTGTCTGAACCCCTGAAGAATATATGTGTGGAGAGAGGGCCTTCTCTCTTGCAATGCATGGCACAAGCTTGGAATAATCAAGATGAATCTGCTcgtaaattttatcatttcgAGGATCGCAGCCTTCTTTTGGTTTTGCTTActtcaaaattaacttatgtttCTATGACTGCCAGGCACTCGGCATTctaa 744 0.422 MESVGCEKIAKQLSAAGWTAFFTPGKQNYKDAAYLSPDGKAHWSITLAYNRLKQRYEAGDGEGEVYEPGFRLTPVPEEDIKIVTEGMDKEGKGQEVVRVDRVHQKVVQQNKKNKKLNEPCPGKRTVLSWMVDMGAIQPRERVCYLDHQRNRALLCGVVAGGCIRCDCCFQSVSVSEFEAHSRSLVSEPLKNICVERGPSLLQCMAQAWNNQDESARKFYHFEDRSLLLVLLTSKLTYVSMTARHSAF 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1306 247 PANTHER PHD FINGER PROTEIN 12 7 115 IPR042163 GO:0003714|GO:0045892
Ssu4g1306 247 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 7 115 - -
Ssu4g1306 247 PANTHER PHD FINGER PROTEIN 12 122 222 IPR042163 GO:0003714|GO:0045892
Ssu4g1306 247 Pfam Tify domain binding domain 156 206 IPR032308 -
Ssu4g1306 247 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 122 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1306 Ssu-Chr4 21354856 21355599 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1306 7 223 PHD Transcription Factor Family AT5G36670 30.522 3.62e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1306 - - aprc:113862113 219.935