Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1305 ATGAGGGAGGGTTTGTGGTCCCAGACGAGGGGGAATGGCAATATCCGTGACGACGTTTCTGATTTGTGTGGTGAAGATCAGAGACAGGCCTTGAATTTAACAAATGAGAAGAAGAGGAAGTGCATAGAGGAACCAGCAGGAAGAAAAGAAGGTGACGACGTGGATCGGTGGAGTTTGAGTGGAGACGCTAACTTATCTAACAATGATGGTTTTAGAATGCAAGAGACCGGAGAATGCTCAATGAGTCTTGAAGTGGATCTTGGTAGTTATAAGATGATAGAGATGGGAGCATGCTCAAGGGGTCCTCCGGTATTTCCCTCGATGTTAAATAGAGGACTCGAGAAAGACGATAGCACTGTTGGCAGCTGTGGTTTTGAGGTCAACACAGAAGGGAATAACAAAGACAAGATTATGGGACTGGAACTGATTGCGAGATTGCAAAACCGCACCAAAGGTTTTAGACGGTTAACTAAAATACATGGTGCAAATATGATGAATTCAACTGAGGATACGTGCCCGAGGAGATCTTTGATGaatgaaatattacaagagtTGCTGCGAAATTCTCAGGCCGAGGTGTGTAAATCTCATGAGAAGGAAGTGGTGCATGGGGAGGGAAAGGGGGGAAATACTGTTGAGATAGTGaatgaaaaattggaaaaagtAAAACTAGGTTGCGGTGCAAGAACGACCAGGGCTCGTAGGCAGCAGAGCACACAGGATAAACGAACTGTGCTTTCCTGGATGACTGATATGGGAGCAATCCTGCCACTTGAGAGGGTTTATTATTTGGATCACCAAAGCAAACGTGCATTACTGTGTGGTGACGTCGTTGGAGGATGCATTCGGTGTGACTGCTGTCTTCAAAGTGTCTCCATTTCGGAGTTTGAAGCTCATTCGTTAAGCAAACTCTCGGAGATTGTTGAAGCTCGTTCAAGAAGCCAAGTGTCTGAACCACTGAGGAATATATGCGTGGAGAGAGGACCTTCTCTCTTGCAATGCATGGCACAAGCATGGAATAATCAACCTGAATCTGCTCGTAAAGTTTATCATTTCGTTCGTGTTGAGGGTCGTGACCAAAACGATGATATTTGTAATCTCTGTGGAGAAGGCGGAGACCTCATCTGTTGCGACTGTTGCACGTCAGCTTTCCATCAAAACTGCTTGGGTATACAAATACTTCCATCAGGTGACTGGCACTGTATGTATTGCCGTTGCAAATTTTGTGGTTTGTATGGTGGAAAGGAAAAGGACAGCTCTGAAGGTTTTTTCCAGTCTATGATATCCGAATGCCGTATATGCGAGCAAAAATaTCACCAATCCTGTCTTGAAGCAAATCGAGCCACTACTGTTCATTCTAAAGAGGCATTCTTATGTGGAAACGGATGTAAAGAGTTATCTGAGAGACTTAAAATGCTTTTTGgagttaaaaatgaaatagaagatGGACTTTCGTGGTCTTTTATTTGGAGGTCAGATGTTGACTCTACTGCCTTGGAGATAAAACCCCATATGGTTGAATCTAATGCCAAACTGGCTGTTGCTGTATCATCAATGAATGAGGGCTTCATGCCATGCATTGATAAGAAAAGAGGAATTAATGTGATCCATAGTGTTCTATATAATTGTGGGTCAAACTTCACTCGGCTGGATTGTAAGAGATTTGTTACTgcaattctagagagagatgatGAGATTATCAGCGTTGCATCTATCAGgaTCCATGGGAACCAATTAGCAGAGATGCCATATGTTGCGACCCGCTCTATTTATAGGCGAAAAGGAATGTGCAGCCGGCTTCTAAAAGCCATTGAATTGGCACTCAGCTTTCTAAATGTTGAGTTATTGGTCATACCAGCCATCTCAAAACTCAGAGAAACATGGATTTCTGCTTTTGGGTTTGAGCCAATTGATTCGAGAAGCAAGACAATCATAAAGGGCATGAATCTGTTGGTATTCCCTGACACAGTAATGTTACAGAAAAAGATACCAAAGCGTAATTTTCCTAATGGGAATTTGATTCCTACAGAAGTTTCCAATCTCAAAAGATCAGCAAGACAGTGCAAAGGGAAGCAAAAAATCCTCTAA 2088 0.4157 MREGLWSQTRGNGNIRDDVSDLCGEDQRQALNLTNEKKRKCIEEPAGRKEGDDVDRWSLSGDANLSNNDGFRMQETGECSMSLEVDLGSYKMIEMGACSRGPPVFPSMLNRGLEKDDSTVGSCGFEVNTEGNNKDKIMGLELIARLQNRTKGFRRLTKIHGANMMNSTEDTCPRRSLMNEILQELLRNSQAEVCKSHEKEVVHGEGKGGNTVEIVNEKLEKVKLGCGARTTRARRQQSTQDKRTVLSWMTDMGAILPLERVYYLDHQSKRALLCGDVVGGCIRCDCCLQSVSISEFEAHSLSKLSEIVEARSRSQVSEPLRNICVERGPSLLQCMAQAWNNQPESARKVYHFVRVEGRDQNDDICNLCGEGGDLICCDCCTSAFHQNCLGIQILPSGDWHCMYCRCKFCGLYGGKEKDSSEGFFQSMISECRICEQKYHQSCLEANRATTVHSKEAFLCGNGCKELSERLKMLFGVKNEIEDGLSWSFIWRSDVDSTALEIKPHMVESNAKLAVAVSSMNEGFMPCIDKKRGINVIHSVLYNCGSNFTRLDCKRFVTAILERDDEIISVASIRIHGNQLAEMPYVATRSIYRRKGMCSRLLKAIELALSFLNVELLVIPAISKLRETWISAFGFEPIDSRSKTIIKGMNLLVFPDTVMLQKKIPKRNFPNGNLIPTEVSNLKRSARQCKGKQKIL 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1305 695 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 514 664 IPR000182 GO:0016407
Ssu4g1305 695 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 240 687 - -
Ssu4g1305 695 Pfam Tify domain binding domain 279 337 IPR032308 -
Ssu4g1305 695 PANTHER PHD FINGER PROTEIN 12 240 687 IPR042163 GO:0003714|GO:0045892
Ssu4g1305 695 SUPERFAMILY FYVE/PHD zinc finger 354 411 IPR011011 -
Ssu4g1305 695 ProSitePatterns Zinc finger PHD-type signature. 365 404 IPR019786 -
Ssu4g1305 695 SMART PHD_3 364 405 IPR001965 -
Ssu4g1305 695 SMART PHD_3 408 464 IPR001965 -
Ssu4g1305 695 CDD NAT_SF 559 605 - -
Ssu4g1305 695 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 353 459 IPR013083 -
Ssu4g1305 695 ProSiteProfiles Zinc finger PHD-type profile. 362 407 IPR019787 -
Ssu4g1305 695 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 550 642 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1305 Ssu-Chr4 21342706 21349866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1305 242 663 PHD Transcription Factor Family AT1G05380 47.430 9.30e-123 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1305 - - ccaj:109798030 605.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1305 4 21342706 21349866 Ssu7g2118 7 41815661 41823636 PCT