Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1304 ATGCAACCGTTCACACCCGAATCCCCCCCTGCGAGCCCCACCGCCACTTCCTCATCCGTCGATCACAATCATAACCGTCCATCCTCACCCGCCACGTCATCAATCCCGATCAACAACGTCAACCGTGATCACCACGCCGCGACCCTACAAAACCCGTTTCCGTTCCTCGAACCCGAACCCGCCGTCTTGGCCACCGCCTTCGCCTCACAacgcttcttcttctcctccccCGGCCGCTCCAACTCCATCGTCGAATCCACCAACACCGACGCCGATTGCACCACCACCTCGTCATCCTCGCCGGCGACGGCGGTGGGGGACGAACCCGCCGCCGTGGACGAGAAGGCAAAGGCGAAGGCGGTGTTCTGCGGCAGCGTGGCGGTGGAGACGTACTCGCCGGACCCTTACGCGGACTTCCGGCGGTCCATGGAGGAGATGGTGGAGGCGCGTCCCGAGTTGATGGACGTGAAGTCCAATTGGCACGTGCTGCACGAGCTTCTTCTCTGCTATCTCGCGCTTAACCCCAAGAGCACGCACAATTTCATTCTAGCTGCTTTTGCCGATCTTCTCGTTGGCTTCATTTCTTCGCCGCCGCAGAATCCCGGTCCCGGCGACGTAGCCGGCGCTGGCGATGGATGCTCCAATTAG 648 0.5972 MQPFTPESPPASPTATSSSVDHNHNRPSSPATSSIPINNVNRDHHAATLQNPFPFLEPEPAVLATAFASQRFFFSSPGRSNSIVESTNTDADCTTTSSSSPATAVGDEPAAVDEKAKAKAVFCGSVAVETYSPDPYADFRRSMEEMVEARPELMDVKSNWHVLHELLLCYLALNPKSTHNFILAAFADLLVGFISSPPQNPGPGDVAGAGDGCSN 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1304 215 Pfam Transcriptional repressor, ovate 132 192 IPR006458 -
Ssu4g1304 215 MobiDBLite consensus disorder prediction 79 104 - -
Ssu4g1304 215 PANTHER TRANSCRIPTION REPRESSOR OFP12 20 198 - -
Ssu4g1304 215 ProSiteProfiles OVATE domain profile. 128 192 IPR006458 -
Ssu4g1304 215 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 20 198 IPR038933 GO:0045892
Ssu4g1304 215 MobiDBLite consensus disorder prediction 1 38 - -
Ssu4g1304 215 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 126 192 IPR006458 -
Ssu4g1304 215 MobiDBLite consensus disorder prediction 11 38 - -
Ssu4g1304 215 MobiDBLite consensus disorder prediction 79 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1304 Ssu-Chr4 21338819 21339466 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Ssu4g1304 Ovate 8.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1304 - - gmx:102663086 232.646
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1304 4 21338819 21339466 Ssu7g2119 7 41828965 41829594 PCT