Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1291 ATGGGTAACGCAGACTATGCATACCCTTCGGGTATGAACGTGGAGTGTGTGCACCGAGTGGCCATTCCTCCCCCTCAACCGTTCTTCAAGTCCGTCAAGTACTCTATGAAAGAGACCTTTTTCCCAGATGACCCGTTTAGGAAGTTCAAGAACCAGCCAGCCTCTAAGAGGTTCGTGCTTGGGCTTCAGTACTTCTTCCCCATCTTCGAGTGGGCACCCAAATACACCCTCCACTTCTTCAAATCAGACCTCATAGCTGGCATCACCATTGCTAGTTTGGCCATTCCTCAAGGCATCAGTTACGCCAAGCTAGCCAACCTCCCTCCAATTCTTGGACTTTATTCGAGCTTTATACCGCCGTTGATTTATGCCATGATGGGAAGTTCCAGGGATTTGGCAGTGGGAACTGTGGCGGTTGGATCGCTTCTCATAGCTTCCATGTTGGGTCGAGTGGTCAATTTCAACGAGAATCCAAAGCTTTTTCTCCACCTGGCTTTCACTGCTACATTCTTTGCTGGAGTTTTGCAAGCATCACTGGGTCTGTTCagGTTAGGGTTCATCGTGGATTTTCTGTCACATGCAACCATAGTAGGGTTCATGGGGGGAGCAGCTACAGTGGTTTGCCTGCAACagctaaaatcaattctagGCCTTGAGCATTTCACCCACGAGGCCGATCTCGTGTCAGTAATGCGCTCTGTTTTTACCCAAACTCATGAGTGGAGGTGGGAAAGCGCTGTGTTGGGTTGTTGCTTTATTTTCTACCTCCTCGTCACAAGATACTTCAGCAAACGAAAGCCGAAGTTCTTCTGGGTGTCAGCAATGGCACCACTAATGTCCGTTATACTGGGAAGTCTGCTGGTTTATCTTACACACGCCGAGAAGCATGGCGTTCAAGTGATAGGAGACTTGAAGAAGGGGCTAAATCCACCTTCGGTGACGGATTTGGTGTTTGTGTCGCCTTATATGGGCACTGCCATAAAAACTGGACTTGTCACTGGCATTATAGCGCTTGCAGAAGGAATAGCAGTGGGAAGAAGCTTTGCAATGTTTAAGAATTATCATATTGATGGCAACAAAGAGATGATAGCTATTGGAACCATGAATATTTTTGGTTCGTTCACCTCTTGCTATCTCACCACAGGACCATTTTCGCGTTCAGCAGTGAACTACAATGCTGGGTGCAAGACTGCTGCATCAAACATTGTAATGTCAATTGTAGTgatgttgacattgttattctTAACACCCTTGTTCCATTTCACTCCCCTGGTGGTGCTATCAGCCATAATTGTGTCAGCAATGCTTGGGCTCATAGATTATCAAGCAGCCATTCATTTGTGGAAAATCGACAAATTTGATTTCTTAGTGTGTATCAGTGCTTATGTTGGCGTAGTCTTTGGCAGTGTTGAAATTGGCCTAGTCATAGCAGCCAAGAACATTTCTTTTAGGCAACATTCCAAATTCTGCAGCTTACAGAAATGTGGAACAATATCCAATGCAAATCATATTCCTGGAATTCTAATTCTTGAAATTGATGCACCCATTTACTTTGCCAATGCAAGCTATTTAAGAGAAAGGATCACAAGGTGGATTGATGAAGAGGAAGATAGAATTAAAGCTGCAGGGCAAACCAGTTTGCAATATGTTATAATGGATATGACTGCTGTTGGGAACATTGATACAAGCGGAATAAGCATGCTTGAAGAGTGCAAGAAGACTGTTGACAGAAGAGGGTTACAACTTGTTTTGGTCAATCTTAGAAGCGAGGTGATGAAGAAGCTGAACAAATCCAAGTTCCTTGATGAATTGGGGCATAAATGGATCTTTCTAACAGTTGAAGAGGCTGTTGGAGCATGCAACTTCATGCTCCAGACATACAAACCGAACCCCATGAAAGATGAATCAGAAGGTTGGAACAATGCCTGA 1929 0.4391 MGNADYAYPSGMNVECVHRVAIPPPQPFFKSVKYSMKETFFPDDPFRKFKNQPASKRFVLGLQYFFPIFEWAPKYTLHFFKSDLIAGITIASLAIPQGISYAKLANLPPILGLYSSFIPPLIYAMMGSSRDLAVGTVAVGSLLIASMLGRVVNFNENPKLFLHLAFTATFFAGVLQASLGLFRLGFIVDFLSHATIVGFMGGAATVVCLQQLKSILGLEHFTHEADLVSVMRSVFTQTHEWRWESAVLGCCFIFYLLVTRYFSKRKPKFFWVSAMAPLMSVILGSLLVYLTHAEKHGVQVIGDLKKGLNPPSVTDLVFVSPYMGTAIKTGLVTGIIALAEGIAVGRSFAMFKNYHIDGNKEMIAIGTMNIFGSFTSCYLTTGPFSRSAVNYNAGCKTAASNIVMSIVVMLTLLFLTPLFHFTPLVVLSAIIVSAMLGLIDYQAAIHLWKIDKFDFLVCISAYVGVVFGSVEIGLVIAAKNISFRQHSKFCSLQKCGTISNANHIPGILILEIDAPIYFANASYLRERITRWIDEEEDRIKAAGQTSLQYVIMDMTAVGNIDTSGISMLEECKKTVDRRGLQLVLVNLRSEVMKKLNKSKFLDELGHKWIFLTVEEAVGACNFMLQTYKPNPMKDESEGWNNA 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1291 642 CDD STAS_SulP_like_sulfate_transporter 501 613 - -
Ssu4g1291 642 PANTHER SLC26A/SULP TRANSPORTER-RELATED 2 640 - -
Ssu4g1291 642 Pfam Sulfate permease family 80 460 IPR011547 GO:0016021
Ssu4g1291 642 Pfam STAS domain 500 616 IPR002645 -
Ssu4g1291 642 Gene3D STAS domain 495 623 IPR036513 -
Ssu4g1291 642 PANTHER SULFATE TRANSPORTER 2 640 IPR001902 GO:0015301|GO:0016020|GO:0055085
Ssu4g1291 642 SUPERFAMILY SpoIIaa-like 503 620 IPR036513 -
Ssu4g1291 642 ProSiteProfiles STAS domain profile. 497 620 IPR002645 -
Ssu4g1291 642 ProSitePatterns SLC26A transporters signature. 109 130 IPR018045 GO:0008271|GO:0008272
Ssu4g1291 642 TIGRFAM sulP: sulfate permease 67 616 IPR001902 GO:0015301|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1291 Ssu-Chr4 21153412 21162522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1291 18 630 Inorganic Solute Cotransporters AT4G02700 65.183 0.0 842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1291 K17471 - gmx:100791091 1160.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1291 4 21153412 21162522 Ssu4g1291 4 21153412 21162522 ECH
Ssu4g1291 4 21153412 21162522 Ssu7g2137 7 42105988 42113737 PCT