Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1290 ATGGAGCAGTATGAAATTCTAGAACAGATTGGCAAGGGTGCATTTGGTTCTGCCCTGCTTGTGAGGCACAAGCACGAAAAGAATAAGTATGTCCTTAAAAAGATCCGTCTTGCTCGCCAAACTGACAGAACCCGTAGGTCTGCCCACCAGGAGATGGAGCTTATATCTAGAGTTCGAAAtccatttattgtggagtataAGGATTCCTGGGTAGAAAAGGGTTGTTTTGTATGTATCATCATTGGCTATTGTGAAGGAGGGGATATGGCTGAAGCTATAAAAAAGGCTAATGGTGTTAACTTTCCCGAAGAGAAACTTTGTAAGTGGCTTGTTCAGTTGCTGATGGCTCTTGATTACTTGCATGTAAATCATATTCTTCATCGTGACGTCAAGtGTTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTGACTTTGGTCTTGCTAAAATGTTGACATCTGATGATCTTGCTTCCTCGGTTGTTGGGACTCCAAGTTATATGTGCCCAGAGCTTCTTGCTGATATACCCTATGGTTCGAAGTCAGATATCTGGTCTTTGGGATGCTGTATCTATGAAATGGCTGCTCACAAGCCAGCTTTTAAAGCTTTTGACATACAATCattgattatcaaaataaacaagTGTATAGTAGCTCCTTTGCCAACTATGTATTCTGCTGCTTTTCGAGGGCTTGTCAAAAGTATGCTGCGGAAAAATCCAGAGCTGAGACCATCTGCTGCAGAATTACTAAATCATCCGCATCTTCAGCCTTACATtcataaaattcacttaaaattaaatagccCCAGAAGAAGTACTTTTCCATTCCAATGGCCCGAATCAAATTATGTAAGGAGAACTTGGTTCGTAGAGCCAGAATCTGTTTCTACTCTTTTTGACCAAGATAAATGCTTGTCATTTAGCAATGACAGGACCTTGAATCCTAGTATTTCTGGAACTGAACAAGTTTCTCAGTGTTCTACTCAAAGAGCACATGGATTATCCACTTGTTCAGAAGAGAAGATCTATGAACTATCAGTAGGTTGTGTCCGTGACAAACGCAATACTGACAAATCCAAAGCCACAAAGTTCTCAACTGTTGAGAGAACACCAAGATTGAGCGCAGTTAAAAATTCTGCCACTCCCAAAAGGCAAACAATGGCACCATCAAAGACAACCCATACTGGTCCAAATTGTGATTCACTTCCAGTGTCTCATGCACCATCTGTAAAGCCTTCCCCACCAACTCTTAGAGCATCCGTTCCACTGGCTCCAAGAGCCAGGGCCACAGCAAACTTATACACCACCGTTGGTCTCCTGGGAAGTGTGGATTCTCTTGATGTTTCTGTTAACGCACCACGAATTGACAAGATTGCAGAATTTCCAATGGTTTTCTGTGAGGATCCTTTTTTCCCTGCCCGTGCACCGTCATCCACATCAGCCCGCTGCTCTTCTAGCTCAGCAGGGAGTACTGCTGATTGCTCCATCACGAAGGACAAGTGTACAATCCACGTGGACAAAGTTACTGTCCCCACCAGTACTGGTGATGCATGTCCTGGTCCAAAGGGCACTCAATGCTCTTCTGAGCATGTGACAACTGGTGTTTCAAGCGAGTTGCAGCAGCGGCGGTTTGACACCTCGTCGTACCAGCAACGCGCGGAGGCATTGGAGGGGTTGCTGGAGTTCAGTGCCAGGCTCCTACAACAACACAGGTTTGAAGAGCTTGGGGTGTTGCTGAAGCCATTCGGGCCTGAGAAGGTTTCTCCAAGGGAAACAGCTATTTGGTTGACCAAGAGCTTTAAGGAAACTGTGGTCtaa 1827 0.4313 MEQYEILEQIGKGAFGSALLVRHKHEKNKYVLKKIRLARQTDRTRRSAHQEMELISRVRNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAEAIKKANGVNFPEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAAHKPAFKAFDIQSLIIKINKCIVAPLPTMYSAAFRGLVKSMLRKNPELRPSAAELLNHPHLQPYIHKIHLKLNSPRRSTFPFQWPESNYVRRTWFVEPESVSTLFDQDKCLSFSNDRTLNPSISGTEQVSQCSTQRAHGLSTCSEEKIYELSVGCVRDKRNTDKSKATKFSTVERTPRLSAVKNSATPKRQTMAPSKTTHTGPNCDSLPVSHAPSVKPSPPTLRASVPLAPRARATANLYTTVGLLGSVDSLDVSVNAPRIDKIAEFPMVFCEDPFFPARAPSSTSARCSSSSAGSTADCSITKDKCTIHVDKVTVPTSTGDACPGPKGTQCSSEHVTTGVSSELQQRRFDTSSYQQRAEALEGLLEFSARLLQQHRFEELGVLLKPFGPEKVSPRETAIWLTKSFKETVV 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1290 608 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Ssu4g1290 608 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 597 - -
Ssu4g1290 608 MobiDBLite consensus disorder prediction 374 421 - -
Ssu4g1290 608 CDD STKc_Nek 3 258 - -
Ssu4g1290 608 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1290 608 Gene3D Transferase(Phosphotransferase) domain 1 86 290 - -
Ssu4g1290 608 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1290 608 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1290 608 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Ssu4g1290 608 PANTHER SERINE/THREONINE-KINASE NEK4 1 597 - -
Ssu4g1290 608 MobiDBLite consensus disorder prediction 374 405 - -
Ssu4g1290 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Ssu4g1290 608 SUPERFAMILY Protein kinase-like (PK-like) 1 327 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1290 Ssu-Chr4 21101758 21108199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1290 10 259 MAP Kinase Kinase Kinase AT1G53570 30.588 1.04e-35 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Ssu4g1290 Pkinase 1.8e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1290 K08857 - gmx:100792678 1020.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1290 4 21101758 21108199 Ssu4g1290 4 21101758 21108199 ECH
Ssu4g1290 4 21101758 21108199 Ssu7g2138 7 42167444 42173744 PCT