Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1287 ATGAGGAGTTTCTTCCCTGCTGAATCCTGTAAAGAAGCGCACCCAAATGCTTTGAATCTTCAGTCTTGTCTTCAAATTGAAAGAGGGAAACTTCCCAAGTTGTCATCACACCCCTCATCTGCCTCAATAGAGTCTCTGATCAAGGTCCCACAGCCAGCTATACTGCCTTTCTTTAAGCCTGCTGATTATGTGGAGGTTTTAGCTCAAATCCATGAAGAGCTCGAGTGTTGTCATCCGCAAGAGCGGTCGAATCTGTTTTTGTTACAATACCAGGTCTTTAGGGGCCTTGGGGAAGTTAAACTGATGCGTAGAAGCCTCCAGGGAGCTTGGCAGAGAGCCAACACTGTTCATGAGAAGATTATATTTGGGGCTTGGTTGAAATATGAGAAGCAAGAGGAAGGGCTAATAGCTGACTTGCTTGCGAATTGTGGTAAATGTGCGAAGGAGTTTGTGCCTGTAGATATAGCGTCTCATCTTCCGTTTGATGTAAATGCAAGTTCTGAGGGGAGAATGAACAATGAGAACCACATTTCacaaaatgttacttttaagattggaaatgaaaagataatttgTGATAGACAAAAGATTTCAGAACTTTCAGCACCATTTCATACAATGCTAAAGGGGTATTTCAGCGAATCACTCTCTGAGACTATAGATTTGTCTGAAAACAATATCTCTCCTTCAGGTATGAAGGCAATAAGTGATTTCAGTTTTACTGGCAGTTTAATTGATGTCCCTCCAAATCTTATGTTGGAGATATTAGTTTTCGCAAATAAGTATTGTTGTGAAAGACTTAAAGATGCTTGCGATAGAAGACTTGCATCCTTAGTTTCCTCCAAAGAAGATGCTGTGGAGCTCATGGAATATGCTCTTGATGAGAATTCAACTGTCCTTGCTGCATCTTGTTTACAAGTCCTTTTGCGTGATCTTCCAACCTGTTTGAATGACAATCGGGTGGTGGATATATTTGTTTATGCTAATAAGCAGCAGCTAGCAGTCATGGCTGGGCCAGGTATATTTGCACTTTTCTGTTTCTTAAGTGAAGTTTCTATGAACCTTAATTCTAGTTCAGACACAACAGCTCATATCCTGGAACAGTTAGTTGAGTTTGCTGAGAATGACAGGCAGAGACTGCTGGCTTTACATCAATTGGGATGTGTAAGACTCTTAAGGAAAGAATATGGTGAAGCACGTTTTCTTTTTGAAGGGGctgtaaatgcaggccatataTATTCTGTGGCAGGTTTAGCTAGACTGGACTATGTAAAGGGTGACAAGCTTTTATCTTATGAGAAGCTCAGCTCAGTCATTTCATCTGTTACTTCACTTGGATGGATGTATCAGGAAAGATCACTATACTGTGACGGTGACAAAAGGTGGGAGGACCTTGAGAAAGCAAGTAATCTGGATCCTACTCTCATATATCCTTACATGTACAGGGCTGCCTCTTTAATGAGGACGCAGAATGCTCAAGCTGCACTAGCAGAAATCAATCGGATTCTTGGGTTCAAACTTTCACTAGAATGCTTGGAAATACGATTTTTTATCCATCTGGCTCTTGAGGACTACAAAGCAGCTCTATGTGATGTTCAAACAATTCTTACTTTGCATTCAGATTATAGAATGTTTGAGGGGCGTGTTGCTGCATCCCAACTCTGTACTCTTGTGCGTGAGCATGTTGAACGTTGGACAACTGCAGATTGTTGGGCACGGTTATATGACTGTTGGTCTGCAGTTGATGATATTGGGTCTCTGTCAGTTATCTACCAGATGCTTGAATCTGATGCGGCAAAAGGTGTTCTATACTTCAGACAGTCATTGCTTCTCCTAAGGTTGAGCTGTCCTGAGGCTGCTATGCGGAGTTTACAGTTAGCTCGGCAACATGCATCAAGTGAGCATGAACGACTTGTATATGAGGGGTGGATCCTATATGATACAGGTCATTATGAGGAAGGGCTCCGGAAAGCTGAAGAGTCTATCAGTATCAAAAGATCTTTTGAGGCCTTTTTCCTGAAGGCCTATGCATTGGCTGACTCAAGTACAGATCCATCATGTTCGTCAACTGTTATTTCACTTCTGGAAGATGCCTTGAAGTGTCCTTCGGATAATCTGCGCAAAGGTCAGGCACTGAACAATCTTGGAAGTGTTTATGTTGACCATGGTAAATTAGACTTGGCTGCTGATTGTTATATCAATGCCCTTAAAATCCAACACACCCGAGCTCATCATGGTCTTGCTCGTGTTCATTGTCTCAAAAATGATAAGGCTGCTGCTTATATGGAAATGACAGAACTTATTAAGAAGGCAAAAAACAATGCATCTGCTTATGAGAAGAGGTCCGAGTACTGTGATCGTGAACAAGCAAAGGCAGATCTGGAGATGGTCACTAGACTAGATCCACTTCGGGTGTATCCTTATAGATATCGTGCTGCAGTATTGATGGACAACCATAAGGAAGAGGAAGCCATTGCGGAACTCTCTAGAGCTATTGCATTTAAAGCTGATTTGCACCTCTTACATCTACGTGCAGCATTCCATGAGCATAAAGAGGATGTCTTAGGTGCTCTAAGAGACTGTCGTGCTGCCCTCTCGGTGGACCCAAACCACCAAGAAATGTTGGAACTTCATAGTCGAGTTAATAGCCACGAGCCATGA 2661 0.4153 MRSFFPAESCKEAHPNALNLQSCLQIERGKLPKLSSHPSSASIESLIKVPQPAILPFFKPADYVEVLAQIHEELECCHPQERSNLFLLQYQVFRGLGEVKLMRRSLQGAWQRANTVHEKIIFGAWLKYEKQEEGLIADLLANCGKCAKEFVPVDIASHLPFDVNASSEGRMNNENHISQNVTFKIGNEKIICDRQKISELSAPFHTMLKGYFSESLSETIDLSENNISPSGMKAISDFSFTGSLIDVPPNLMLEILVFANKYCCERLKDACDRRLASLVSSKEDAVELMEYALDENSTVLAASCLQVLLRDLPTCLNDNRVVDIFVYANKQQLAVMAGPGIFALFCFLSEVSMNLNSSSDTTAHILEQLVEFAENDRQRLLALHQLGCVRLLRKEYGEARFLFEGAVNAGHIYSVAGLARLDYVKGDKLLSYEKLSSVISSVTSLGWMYQERSLYCDGDKRWEDLEKASNLDPTLIYPYMYRAASLMRTQNAQAALAEINRILGFKLSLECLEIRFFIHLALEDYKAALCDVQTILTLHSDYRMFEGRVAASQLCTLVREHVERWTTADCWARLYDCWSAVDDIGSLSVIYQMLESDAAKGVLYFRQSLLLLRLSCPEAAMRSLQLARQHASSEHERLVYEGWILYDTGHYEEGLRKAEESISIKRSFEAFFLKAYALADSSTDPSCSSTVISLLEDALKCPSDNLRKGQALNNLGSVYVDHGKLDLAADCYINALKIQHTRAHHGLARVHCLKNDKAAAYMEMTELIKKAKNNASAYEKRSEYCDREQAKADLEMVTRLDPLRVYPYRYRAAVLMDNHKEEEAIAELSRAIAFKADLHLLHLRAAFHEHKEDVLGALRDCRAALSVDPNHQEMLELHSRVNSHEP 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1287 886 Gene3D Potassium Channel Kv1.1; Chain A 171 319 IPR011333 -
Ssu4g1287 886 Coils Coil 761 781 - -
Ssu4g1287 886 PANTHER ETO1-LIKE PROTEIN 1 1 886 - -
Ssu4g1287 886 SUPERFAMILY TPR-like 692 877 IPR011990 GO:0005515
Ssu4g1287 886 Gene3D Tetratricopeptide repeat domain 598 777 IPR011990 GO:0005515
Ssu4g1287 886 SUPERFAMILY POZ domain 175 275 IPR011333 -
Ssu4g1287 886 PANTHER ETO1-RELATED 1 886 IPR044631 GO:0010105
Ssu4g1287 886 SMART BTB_4 179 279 IPR000210 GO:0005515
Ssu4g1287 886 Pfam BTB/POZ domain 178 275 IPR000210 GO:0005515
Ssu4g1287 886 SMART tpr_5 635 668 IPR019734 GO:0005515
Ssu4g1287 886 SMART tpr_5 709 742 IPR019734 GO:0005515
Ssu4g1287 886 SMART tpr_5 838 871 IPR019734 GO:0005515
Ssu4g1287 886 Gene3D Tetratricopeptide repeat domain 778 885 IPR011990 GO:0005515
Ssu4g1287 886 ProSiteProfiles TPR repeat profile. 709 742 IPR019734 GO:0005515
Ssu4g1287 886 Gene3D Tetratricopeptide repeat domain 359 546 IPR011990 GO:0005515
Ssu4g1287 886 SUPERFAMILY TPR-like 461 779 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1287 Ssu-Chr4 21017992 21025746 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Ssu4g1287 BTB 1e-05 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1287 - - gmx:100793740 1636.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1287 4 21017992 21025746 Ssu7g2147 7 42230654 42234357 PCT