Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1286 atgaaCTATTTGTACCCGGTGAAAGAGGAGTACATGGaatcaccaccatcatcatcgtCGTTGTCACCAACTTCTCACGCAGGAGTTGATGAGTCAGCAATGGTTCTTCCTCCGAGGCCAATGGAGGGGCTTCAAGAAATAGGGCCACCCCCGTTTCTGACCAAGACTTTCGATGCAGTGGAGGACCACACCACTAGTCACATAGTTTCATGGAGCAGAGGCGGTGCTAGCTTTGTGGTGTGGGATCCACAAGCTTTCTCCAGAGACCTTCTTCCCAGATACTTCAAGCACAACAATTTCTCAAGCTTTGTCAGGCAACTAAACACTTACggttttagaaaaattgatcCAGATAGGTGGGAGTTTGCAAATGAGGGATTCCTGAGAGGGCACAGGCACCTATTGGTAAACATAAGGAGAAGGAAGCAACCTTCTCAGCCCTCTCCTTCTCAACAAGCTCAAGGTCACTGCATTGAAGTTGGCCGTTTTGGACTTGATGAAGAGGTTGACCGTTTGAGGCGTGACAAGCAGGTGTTGATGATGGAGCTTGTGGGGCTCAGACAGCAGCAACAGAATACCATGTCCTACCTTAAGGCAATGGAGGAGAGGCTACGAGGGACAGAAATTAAGCAGCAACATATGATGGCTTTCTTGGCTAGAGCTTTGAAGAACCCCACCTTCATCCAGCAGCTACTCCAGCAGAAAGAGAAGAGGAAGgagcttgaagaggccatgTCCAAGAAGAGGAGAAGGCCAATTGAGCAAGGGCCTAGTGGGGTTGGAGAATCAAGCAGTGGAGGGGAAGGAAGGAGCAGTGCTAAAGTTGAGCCATTAGTGTTTGGGGAATATGGATTTGGAGTGTCAGAGTTGGAAGTGTTGGCTATGGAGATGCAAGGTTATGGTAGAGGGAGGAGGGAACAAGAGGAGGAGTCTGAGGCACTAGAATCACAAGAGAGGTTGGACAAAGAACTTGATGAAGCGTTCTGGGAGGAACTGTTCAGTGAGGGTTTTGAGGGTGAATTAAATATTCCAACTTCCCAAGATGAAGATGTCAATGTGTTGGCCAATCGCTTAGGTTACTTGGGTTCAAGTCCTAAATGA 1101 0.4569 MNYLYPVKEEYMESPPSSSSLSPTSHAGVDESAMVLPPRPMEGLQEIGPPPFLTKTFDAVEDHTTSHIVSWSRGGASFVVWDPQAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFLRGHRHLLVNIRRRKQPSQPSPSQQAQGHCIEVGRFGLDEEVDRLRRDKQVLMMELVGLRQQQQNTMSYLKAMEERLRGTEIKQQHMMAFLARALKNPTFIQQLLQQKEKRKELEEAMSKKRRRPIEQGPSGVGESSSGGEGRSSAKVEPLVFGEYGFGVSELEVLAMEMQGYGRGRREQEEESEALESQERLDKELDEAFWEELFSEGFEGELNIPTSQDEDVNVLANRLGYLGSSPK 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1286 366 SUPERFAMILY "Winged helix" DNA-binding domain 48 141 IPR036390 -
Ssu4g1286 366 Coils Coil 231 251 - -
Ssu4g1286 366 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 30 351 - -
Ssu4g1286 366 PRINTS Heat shock factor (HSF) domain signature 52 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu4g1286 366 PRINTS Heat shock factor (HSF) domain signature 90 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu4g1286 366 PRINTS Heat shock factor (HSF) domain signature 103 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu4g1286 366 Coils Coil 306 326 - -
Ssu4g1286 366 ProSitePatterns HSF-type DNA-binding domain signature. 91 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu4g1286 366 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 30 351 IPR027725 -
Ssu4g1286 366 Gene3D - 45 142 IPR036388 -
Ssu4g1286 366 Pfam HSF-type DNA-binding 52 141 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu4g1286 366 MobiDBLite consensus disorder prediction 238 273 - -
Ssu4g1286 366 MobiDBLite consensus disorder prediction 301 320 - -
Ssu4g1286 366 MobiDBLite consensus disorder prediction 238 255 - -
Ssu4g1286 366 SMART hsfneu3 48 141 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu4g1286 366 Coils Coil 169 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1286 Ssu-Chr4 21002623 21004456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1286 25 364 HSF AT3G22830 54.133 1.19e-128 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Ssu4g1286 HSF_DNA-bind 1.9e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1286 K09419 - gmx:100794264 548.125