Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1285 ATGTTTCCCACGGCTATTTCCAACTCAACTTCTTTGTCCGAGGATGCCAGTGTTTCTTCTGGTACAAAAGTTCAGGACCTGGGAGGACTCAATCACGGGGTCTCAAACATTATTTCTCCTCAGCAGCCTCAAAAgatcaagaaaaagagaagCCTCCCTGGAAATCCAGACCCAGATGCTGAAGTGATTGCCTTATCCCCGAAGTCCCTTTTGGCCACTAATAGATTTGTTTGTGAGATCTGCCACAAGGGTTTCCAGAGAGATCAGAACCTGCAGCTTCATAGGAGGGGCCATAACCTCCCCTGGAAGCTGAAGCAAAGGAACAGCAAAGAGGTCAAAAAGAAAGCCTACGTTTGCCCTGAACCTTCATGCGTTCACCACAACCCCTCAAGGGCTCTGGGGGATCTCACAGGAATCAAGAAACACTACTGCAGAAAGCATGGAGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATATACGCGGTTCAGTCAGATTGGAAAGCTCACTCAAAAACCTGTGGTACTAGAGAATATAGATGTGACTGTGGAACCCTTTTTTCCAGGAAGGACAGCTTCATAACTCATAGAGCATTCTGTGATGCATTGGCTGAAGAAAGTGCAAAACTATCAGCAAATCAATTAgccgccaccaccacaacaAACCCATTCcaatctctctttcttttccaaacCCAACAGAACTTCCAAGACCACCAACTCACCAGTTTCAGTCAATGGGACTCATCTCAAGAAAACCCTAACCCTAGCAACAACATTGCCACTGCCCTCCACATCAAGCCAGAAGCTCAAACTTTCCACAACCCCACCCTCTGTTCACTTCTTCAACAAGAGCAACCCCCCAACAAGGGCATAATAACCTCACCTTTCGGGAACCTCCACGTGCCCACGCAAGCACCCTCCTCCAACGCTGCCACGTCAGCATACATGTCAGCCACTGCATTGCTTCAAAAGGCTGCAACCGTTGGAGCCGCTGCCATCACGGGCCCAGGCCCTGCTGCTGTTGGCGTTGGGCCACAGCGGGTAATGGGTCACGTGACCCAACTCGGCGCGGGCGAGTTCGGAACAGTGAGTCAACTCGACTCGGTGGTGCAGGATAATTACATGAGAGGGTTCCCCACTCGGAGCCTCAAGAGTGACCGTCTCACTAGGGACTTTCTCGGACTGAGGGGAGATGCTAACGGCGGAGTTGACGGCGACGCGGTTGACGTTAGCGCGAACGTGAAGGATATGCTGACGTTCACGGGGGTGTAG 1275 0.4855 MFPTAISNSTSLSEDASVSSGTKVQDLGGLNHGVSNIISPQQPQKIKKKRSLPGNPDPDAEVIALSPKSLLATNRFVCEICHKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESAKLSANQLAATTTTNPFQSLFLFQTQQNFQDHQLTSFSQWDSSQENPNPSNNIATALHIKPEAQTFHNPTLCSLLQQEQPPNKGIITSPFGNLHVPTQAPSSNAATSAYMSATALLQKAATVGAAAITGPGPAAVGVGPQRVMGHVTQLGAGEFGTVSQLDSVVQDNYMRGFPTRSLKSDRLTRDFLGLRGDANGGVDGDAVDVSANVKDMLTFTGV 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1285 424 MobiDBLite consensus disorder prediction 32 48 - -
Ssu4g1285 424 Gene3D Classic Zinc Finger 72 99 - -
Ssu4g1285 424 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Ssu4g1285 424 MobiDBLite consensus disorder prediction 1 26 - -
Ssu4g1285 424 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 423 - -
Ssu4g1285 424 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 8 423 - -
Ssu4g1285 424 MobiDBLite consensus disorder prediction 1 59 - -
Ssu4g1285 424 Gene3D Classic Zinc Finger 110 201 - -
Ssu4g1285 424 SUPERFAMILY beta-beta-alpha zinc fingers 75 172 IPR036236 -
Ssu4g1285 424 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 98 IPR013087 -
Ssu4g1285 424 SMART c2h2final6 76 98 IPR013087 -
Ssu4g1285 424 SMART c2h2final6 152 172 IPR013087 -
Ssu4g1285 424 SMART c2h2final6 117 147 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1285 Ssu-Chr4 20969057 20972351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1285 15 423 IDZ Gene Family AT4G02670 51.325 2.66e-128 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu4g1285 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1285 K25870 - gmx:100812334 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1285 4 20969057 20972351 Ssu7g2149 7 42295172 42298679 PCT
Ssu7g1719 7 35526044 35529504 Ssu4g1285 4 20969057 20972351 PCT