Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1282 ATGAAAAGAATGATGGCAGACCACGCAATGGTTAGGAAACTTTCAGCTTGTGAAACGATGGGGTCAGCAACAGTCATCTGCACAGATAAAACCGGCACCTTAACTTTGAATCAAATGAGAGTCACCAAGTTTTGGCTTGGCCTAGAAAATGTTATGGAAAACTTTGCCAATGCAATGGCCTCTAATGTTCTCGAGTTATTCCACCAAGGAGTTGGCCTCAACACAACTGGCAGTGTCTACAAACCTTCATCATCATCTGAACCTGAAATTTCGGGTAGCCCTACAGAGAAAGCTATACTCTTATGGGCCGTGTCAGATTTAGGCATGGACATGGATGAACTGAAGCGCACGCATCAAGTTCTCCATGTTGAAACGTTTAACTCGGATAAGAAACGAAGTGGCGTCGCAATAAGGAACGAGACCAACAACACAGTTCACGTGCATTGGAAAGGTGCTGCAGAGATTATACTTGCAATGTGTTCTAATTACATTGACAATAACGGCATAGAGAAGTCCCTTGATGAAGAACGGAGTAAACTTGAGAAGATAATTCAAGGCATGGCTGCTAGTAGCCTGCGATGTATTGCTTTTGCTCACATGCAGGTTTCAGAAGATATTGATTATAACGATAAGGAGAAAGCACATCAAATCCTTAGAAAAGATGGCTTGACTTTGCTAGGCATTGTTGGCCTAAAGGATCCGTGCCGACCTGATGTCAGGAAGGCTGTGGAAACTTGTAAACTTGCAGGAGTTAGTATCAAGATGATCACAGGAGATAACGTATTCACTGCAACGGCAATAGCAACAGAATGCGGAATATTAGATCATGATGGCCATGTGAATGCAGGAGAAGTGGTGGAAGGTGTGGAATTCAGGAACTACACTGAGGCAGAGAGAATGGAGAAAGTTGACAAGATCCGCGTGATGGCAAGATCATCCCCTTTGGACAAACATTTGATGGTGCAATGCTTAAAAAAGAAAGGCCATGTTGTTGCAGTCACAGGAGATGGCACAAATGATGCACCTGCTCTAAAAGAAGCTGATATTGGACTTTCGATGGGGATCCAAGGAACTGAGGTTGCCAAGGAGAGTTCCGACATTGTCATCTTAGACGACAACTTCAATTCCGTTGCCACTGTTTTAAGATGGGGGCGATGTGTTTATAACAACATCCAGAAATTCATCCAGTTTCAACTAACCGTGAATGTTGCAGCTCTAGTGATCAATTTTATTGCAGCAGTTTCTTCCGGAGATGTTCCCCTAACAACAGTTCAACTATTATGGGTAAATCTCATTATGGATACTCTAGGAGCTTTGGCACTGGCTACAGAGAGGCCTACAAAGGAGTTAATGGAGAAACGGCCAGTGGGTAGAACTGAGCCTCTTATTACTAGTATTATGTGGAGAAACATTTTAGCTCAAGCTTTATATCAGATTGCTGTCCTCTTGATATTTCAATTCAATGGAAAGTCAATCTTCAATGTAAATGGGAAGGTAAAGGAtactctaatttttaatacttttgttCTCTGCCAAGTTTTCAACGAGGTCAACTCTAGAAGTATGGAGAAACTTAATGTATTCGAAGGCCTTCACAAAAACCACTTGTTTCTTGGAATTGTGGGGATTACTGTTGTTCTTCAAGTTGTGATGGTGGAGCTCCTAAGGAAATTTGCTGATACAGAGAGATTAACATGGATGCAATGGGGAATTTGTATTGTAATTGCAGCAGTGTCATGGCCAATTGCTTGGTTTACAAAGCTCGTACCTGTTTCAGATAATCTGTTCTTCAGCCATGTTAAGTGGGTAAAATTATTGGTCTTCAAGGttaagcatatttttaattttacctcGTCACACGTTTGA 1866 0.411 MKRMMADHAMVRKLSACETMGSATVICTDKTGTLTLNQMRVTKFWLGLENVMENFANAMASNVLELFHQGVGLNTTGSVYKPSSSSEPEISGSPTEKAILLWAVSDLGMDMDELKRTHQVLHVETFNSDKKRSGVAIRNETNNTVHVHWKGAAEIILAMCSNYIDNNGIEKSLDEERSKLEKIIQGMAASSLRCIAFAHMQVSEDIDYNDKEKAHQILRKDGLTLLGIVGLKDPCRPDVRKAVETCKLAGVSIKMITGDNVFTATAIATECGILDHDGHVNAGEVVEGVEFRNYTEAERMEKVDKIRVMARSSPLDKHLMVQCLKKKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFNSVATVLRWGRCVYNNIQKFIQFQLTVNVAALVINFIAAVSSGDVPLTTVQLLWVNLIMDTLGALALATERPTKELMEKRPVGRTEPLITSIMWRNILAQALYQIAVLLIFQFNGKSIFNVNGKVKDTLIFNTFVLCQVFNEVNSRSMEKLNVFEGLHKNHLFLGIVGITVVLQVVMVELLRKFADTERLTWMQWGICIVIAAVSWPIAWFTKLVPVSDNLFFSHVKWVKLLVFKVKHIFNFTSSHV 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1282 621 SUPERFAMILY HAD-like 25 439 IPR036412 -
Ssu4g1282 621 Pfam Cation transporting ATPase, C-terminus 419 588 IPR006068 -
Ssu4g1282 621 Gene3D - 24 379 IPR023214 -
Ssu4g1282 621 PANTHER CALCIUM-TRANSPORTING ATPASE 1 587 - -
Ssu4g1282 621 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 305 414 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu4g1282 621 SUPERFAMILY Calcium ATPase, transmembrane domain M 1 591 IPR023298 -
Ssu4g1282 621 SFLD C1.7: P-type atpase like 9 387 - -
Ssu4g1282 621 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 34 231 IPR023299 GO:0000166
Ssu4g1282 621 Pfam haloacid dehalogenase-like hydrolase 25 348 - -
Ssu4g1282 621 PANTHER CATION TRANSPORTING ATPASE 1 587 - -
Ssu4g1282 621 PRINTS H+-transporting ATPase (proton pump) signature 180 198 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu4g1282 621 PRINTS H+-transporting ATPase (proton pump) signature 334 350 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu4g1282 621 PRINTS H+-transporting ATPase (proton pump) signature 366 391 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu4g1282 621 PRINTS P-type cation-transporting ATPase superfamily signature 249 259 - -
Ssu4g1282 621 PRINTS P-type cation-transporting ATPase superfamily signature 27 41 - -
Ssu4g1282 621 PRINTS P-type cation-transporting ATPase superfamily signature 334 353 - -
Ssu4g1282 621 PRINTS P-type cation-transporting ATPase superfamily signature 227 238 - -
Ssu4g1282 621 PRINTS P-type cation-transporting ATPase superfamily signature 358 370 - -
Ssu4g1282 621 Gene3D - 37 234 IPR023299 GO:0000166
Ssu4g1282 621 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 1 591 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Ssu4g1282 621 Gene3D - 1 587 - -
Ssu4g1282 621 SFLD p-type atpase 9 387 IPR044492 -
Ssu4g1282 621 ProSitePatterns E1-E2 ATPases phosphorylation site. 29 35 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1282 Ssu-Chr4 20883785 20885650 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1282 1 601 Primary Pumps ATPases AT3G63380 72.425 0.0 905
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1282 K01537 - gmx:100806797 1131.7