Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1279 ATGGGTCTGGAAAGGAATCCTCGTGTATTTCTAGATGTCTCAATTGATGGGGACCCTGTGGAAAGAATTGTTATTCAGCTTTTTGCCAGTATAGTTCCTAAGGCAGCAGAGAATTTTCGGGCACTTTGTACAGGTGAGAAGGGCATTGGAGAATCAACTGGGAAACCTTTGCATTATAAAGGAACAAGCTTTCATCGTATAATTAGAGGTTTTATGGCTCAAGGTGGTGATTTTTCAAAGGGTAATGGAACAGGAGGAGAAAGTATATATGGAGGGAAATTTGCAGatgaaaatttcaaactaaCACATGATGGACCTGGCGTTCTTTCTATGGCTAATAGCGGTCCTAACACAAATGGATCTCAGTTCTTTATTACATTCAAGCGCCAACCTCATCTTGATGGGAAACATGTTGTTTTTGGAAAAGTTGTCAATGGAATGgacattttgaagaaaattgagCAGGTGGGAACATCTGATGGGAAACCTACCCAGCCAGTTAAAATTGTTGATTGTGGTGAAGTCTCTGAAACAAAAATTCAGCATACTGTTGAGAAGGAGAAAGGGAAAAGGAGAAAATCAGGGAAATCCCTCACTTCTGATGATAGTTCTGACAAAAAATcaaggggaaaaagaaaaaaatcttccAAAGACACAAGGAAGAGACGGAGGAGATACTCAACATCTGATAGTGATAGTGATAGTGATAGTTATTCCTCAGATTCAGCTTCAGATTCTGAATCGGATTCATCGGATTCTGATTCTAGTTCCTCTAGTTATGCGAAACACCAGAAGAGGAGGAGGAATAAGCGCAAGCACgggaagaagaggaaaattgGACGAAAGCAGAGAAAGAGAAGCCAGCACAGTAGAAGTAGAAGATCAAGACACAAGTCTAGGCGGAGTTCTGAGGATTCAAGTGATACAGAAAGTGATAGCTCTAGTGCTAGTGGCAGTAGTTGTGGTGATGAGAAAGCTGATCGTCACACCTCAGGTCGTAAAACACATGCTGACAATAAAGCGCAAAGAAATCTAGACACAGGAAAGCAATCATCTAGCCTTCCTCGACAAAGTCAAACTATTCCAGAACAAACAATGGATCCCAAAGTTAGAAGAACTGTGGACAAGCAATCACATGAAGAAGGTGAACTGTCACCAGAAAATGGTGCATTTGTGAATAACGGGCATGATACTCAAGCTGACTTTAGTAAACCTGCTAAGCAACATGCTAATTCAGATGATTCAAATCACGATAGAGGTGCAAGTCCTGGAGGAAGTCCTACAAGGGATTCTGGGGAGCTAAACCAAGGACGTGCTTTGTTGGCTAGTCCTGGCCAAAAAGCATCTGAACCTGCTGCCCCCAAACATGGTCATGGCTTTTCAAAAAGCCCTTCACCAAATGGTGTGCCTAAGCGTATTAAAAAAGGGCGTGGCTTTACTGAGCGTTATGCCTTTGCGCGCAGATATCGTACTCCATCTCCAGAGCGGTCTGCTCGTACATATCGTTATGGTGATAGAAATATAAGAAGGAACTTCGATAGAAACACAAGCTACAGAAGTTATTCTGAGCGCTCTCCTCCACGACGTTTTCGAAGCCCGCCAGGGGGCAGGAGTCGTCCAAGataCCAAAGCAGAAGAAGTCGGAGTGGGAGCATCTCTCGCAGTCCAGTGCGTGGCCATTTTAGAGACCGTGATCGGAGTCGGAGTCCAAGACGCAGTCTTAGTCCAGAAGACAGGCGGCCTCCCATAAGTGACAGATTAAAATCCCGACTTGGTCCAAGAAGTGTTCAACGATTGCCAGACAGGGGGAGGTCAAAGTCCAATTCTAGGAGTGGCTCTTCTCGCTCCAGATCCCCTGATGCTACACCGCCAAAACGATATGATAAAAGGACTTCCGTATCTCGAAGCAGGTCTAGATCGAGCTCTTTATCCGGACAAAAGGGTTTAGTTTCTTATGGCGATGCTAGTCCTGATTCTGGGGCAAGGTAG 1989 0.4284 MGLERNPRVFLDVSIDGDPVERIVIQLFASIVPKAAENFRALCTGEKGIGESTGKPLHYKGTSFHRIIRGFMAQGGDFSKGNGTGGESIYGGKFADENFKLTHDGPGVLSMANSGPNTNGSQFFITFKRQPHLDGKHVVFGKVVNGMDILKKIEQVGTSDGKPTQPVKIVDCGEVSETKIQHTVEKEKGKRRKSGKSLTSDDSSDKKSRGKRKKSSKDTRKRRRRYSTSDSDSDSDSYSSDSASDSESDSSDSDSSSSSYAKHQKRRRNKRKHGKKRKIGRKQRKRSQHSRSRRSRHKSRRSSEDSSDTESDSSSASGSSCGDEKADRHTSGRKTHADNKAQRNLDTGKQSSSLPRQSQTIPEQTMDPKVRRTVDKQSHEEGELSPENGAFVNNGHDTQADFSKPAKQHANSDDSNHDRGASPGGSPTRDSGELNQGRALLASPGQKASEPAAPKHGHGFSKSPSPNGVPKRIKKGRGFTERYAFARRYRTPSPERSARTYRYGDRNIRRNFDRNTSYRSYSERSPPRRFRSPPGGRSRPRYQSRRSRSGSISRSPVRGHFRDRDRSRSPRRSLSPEDRRPPISDRLKSRLGPRSVQRLPDRGRSKSNSRSGSSRSRSPDATPPKRYDKRTSVSRSRSRSSSLSGQKGLVSYGDASPDSGAR 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1279 662 MobiDBLite consensus disorder prediction 368 383 - -
Ssu4g1279 662 MobiDBLite consensus disorder prediction 474 517 - -
Ssu4g1279 662 MobiDBLite consensus disorder prediction 262 298 - -
Ssu4g1279 662 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP63 4 415 - -
Ssu4g1279 662 MobiDBLite consensus disorder prediction 391 406 - -
Ssu4g1279 662 MobiDBLite consensus disorder prediction 417 433 - -
Ssu4g1279 662 MobiDBLite consensus disorder prediction 344 366 - -
Ssu4g1279 662 CDD cyclophilin_ABH_like 7 173 - -
Ssu4g1279 662 MobiDBLite consensus disorder prediction 322 343 - -
Ssu4g1279 662 MobiDBLite consensus disorder prediction 180 209 - -
Ssu4g1279 662 MobiDBLite consensus disorder prediction 621 635 - -
Ssu4g1279 662 Gene3D - 2 182 IPR029000 -
Ssu4g1279 662 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 4 415 - -
Ssu4g1279 662 MobiDBLite consensus disorder prediction 180 662 - -
Ssu4g1279 662 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 174 IPR002130 GO:0000413|GO:0003755
Ssu4g1279 662 MobiDBLite consensus disorder prediction 557 605 - -
Ssu4g1279 662 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 20 173 IPR002130 GO:0000413|GO:0003755
Ssu4g1279 662 MobiDBLite consensus disorder prediction 606 620 - -
Ssu4g1279 662 SUPERFAMILY Cyclophilin-like 5 175 IPR029000 -
Ssu4g1279 662 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Ssu4g1279 662 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 IPR002130 GO:0000413|GO:0003755
Ssu4g1279 662 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Ssu4g1279 662 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Ssu4g1279 662 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Ssu4g1279 662 MobiDBLite consensus disorder prediction 232 258 - -
Ssu4g1279 662 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 59 76 IPR020892 GO:0003755|GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1279 Ssu-Chr4 20827069 20831932 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1279 25 171 U-box Gene Family AT5G67530 49.664 2.02e-35 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1279 K09566 - gmx:100807327 806.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1279 4 20827069 20831932 Ssu4g1279 4 20827069 20831932 ECH