Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1274 ATGGAGACGCACGGCGGAGGACCCCTTCGTTCCCGCAGTTCCCAGTCCCCTTCTCCTTCCCACTCCGCCTCGGCCTCCGCCACCTCCTCCATCCACAAGCGCAAGCTCGCGTCTGAGGACCACGCGCCGCCCTTCCCTCCCTCCTCCTTCTCCGCCGACACCCGCGACGGCGCCCTCACCTCCAACGACGACCTCGAGAGCATCTCCGCCCGCGGCGCCGACTCCGACTCCGACGACGACTCCGAGGACGCCGTTGTCGACGACGACGAGGACGACTACGACAACGACAACGACTCCTCCATGCGCACCTTCACCGCCGCCAGACTCAGCAACCCTCCCTCCGCTCCCCGCAACACCAAGCTCAAAACCGATAACACCGTCGTCAAAAACGAAAATTCCGACGGCTCCAAAGACGCCGGAACCGCCGGAACTGGTGGCGCCGCCGCCGCGGGATCTGTCCCCGGGATTGTGGTTAAGGAGGATGCGACTAAGATTTTTACGGATAATTTGCAAACGAGTGGAGCTTACACCGCCAGGGAAGAGAGTCTCAAGAAAGAGGAGGAAGCGGGAAGGCTCAAATTCGTATGCCTATCGAACGATGGGGTTGATGACCATATGGTTTGGTTGATTGGATTGAAGAATATATTTGCTAGACAACTTCCCAATATGCCCAAGGAGTACATTGTCCGACTTGTTATGGATAGGAGCCACAAGTCTGTGATGGTTATACGGCGTAATCATGTTGTAGGAGGCATTACATATCGTCCATATGCTAGCCAGAAGTTCGGTGAGATAGCCTTTTGTGCAATTACAGCTGATGAGCAAGTAAAGGGTTATGGTACCAGATTGATGAATCACTTAAAGCAGTATGCACGTGATGTAGATGGGCTGACACATTTTCTCACCTATGCTGACAATAATGCTGTTGgctattttatcaaacagGGATTTACAAAAGAGATTCACTTGGAGAAAGATCGATGGCAAGGATATATAAAGGATTATGATGGAGGAATTCTCATGGAATGCAAGATAGATCCAAAGCTCCCTTACACTGATTTGTCAACTATGATCCGTCGTCAAAGGCAGGcaattgatgaaaaaatcaGAGAGCTGTCAAACTGTCACATTGTTTATGCTGGAATTGATTTTCAGAAGAAAGAAGCTGgtattcctaaaaaaattattgatgacaTCCCTGGTTTGAGAGAGGCTGGATGGACTCCTGATCAGTGGGGTCATTCAAGATTCAGAAGTTTATCTGGTTCTGCTGACAACGCTACAAATCAAAAACATTTGTGTGTGTTTATGCGTTCACTTCTAAAGTCAATGCACGATCATGCTGATGCTTGGCCATTCAAGGAACCTGTTGATGCACGGGATGTTCCTGATTATTATGACATCATCAAAGATCCAATGGATTTGAAGACAATGTCTAGGAGGGTGGAGTCAGAGCAATATTATGTCACATTTGAGATGTTTGTTGCGGATGTCAGAAGAATGTTTGCGAATGCACGCACCTATAATTCTCCCGAAACCATTTATTACAAATGTGCTACGAGGTTAGAAGCCCACTTTCAAAGCAAAGTGACAGCTGGCCTCCAGTCTCAGTCTGGTTCCAAAATTCAGTAG 1632 0.4773 METHGGGPLRSRSSQSPSPSHSASASATSSIHKRKLASEDHAPPFPPSSFSADTRDGALTSNDDLESISARGADSDSDDDSEDAVVDDDEDDYDNDNDSSMRTFTAARLSNPPSAPRNTKLKTDNTVVKNENSDGSKDAGTAGTGGAAAAGSVPGIVVKEDATKIFTDNLQTSGAYTAREESLKKEEEAGRLKFVCLSNDGVDDHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRRNHVVGGITYRPYASQKFGEIAFCAITADEQVKGYGTRLMNHLKQYARDVDGLTHFLTYADNNAVGYFIKQGFTKEIHLEKDRWQGYIKDYDGGILMECKIDPKLPYTDLSTMIRRQRQAIDEKIRELSNCHIVYAGIDFQKKEAGIPKKIIDDIPGLREAGWTPDQWGHSRFRSLSGSADNATNQKHLCVFMRSLLKSMHDHADAWPFKEPVDARDVPDYYDIIKDPMDLKTMSRRVESEQYYVTFEMFVADVRRMFANARTYNSPETIYYKCATRLEAHFQSKVTAGLQSQSGSKIQ 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1274 543 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 202 351 IPR016181 -
Ssu4g1274 543 PANTHER GH11602P 9 538 IPR037800 GO:0004402
Ssu4g1274 543 MobiDBLite consensus disorder prediction 99 139 - -
Ssu4g1274 543 MobiDBLite consensus disorder prediction 53 68 - -
Ssu4g1274 543 Pfam Bromodomain 438 520 IPR001487 GO:0005515
Ssu4g1274 543 MobiDBLite consensus disorder prediction 8 32 - -
Ssu4g1274 543 ProSiteProfiles Bromodomain profile. 445 516 IPR001487 GO:0005515
Ssu4g1274 543 Gene3D - 418 539 IPR036427 GO:0005515
Ssu4g1274 543 CDD NAT_SF 239 293 - -
Ssu4g1274 543 PANTHER BNAC04G26160D PROTEIN 9 538 - -
Ssu4g1274 543 Pfam Acetyltransferase (GNAT) family 239 317 IPR000182 GO:0016407
Ssu4g1274 543 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 192 346 IPR000182 GO:0016407
Ssu4g1274 543 ProSitePatterns Bromodomain signature. 450 508 IPR018359 -
Ssu4g1274 543 SMART bromo_6 426 535 IPR001487 GO:0005515
Ssu4g1274 543 Gene3D - 188 352 - -
Ssu4g1274 543 MobiDBLite consensus disorder prediction 1 150 - -
Ssu4g1274 543 CDD Bromo_gcn5_like 436 532 - -
Ssu4g1274 543 MobiDBLite consensus disorder prediction 76 96 - -
Ssu4g1274 543 PRINTS Bromodomain signature 497 516 IPR001487 GO:0005515
Ssu4g1274 543 PRINTS Bromodomain signature 448 461 IPR001487 GO:0005515
Ssu4g1274 543 PRINTS Bromodomain signature 462 478 IPR001487 GO:0005515
Ssu4g1274 543 SUPERFAMILY Bromodomain 416 530 IPR036427 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1274 Ssu-Chr4 20752240 20759613 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Ssu4g1274 Bromodomain 2.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1274 K06062 - gmx:100813942 932.939