Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1272 ATGGCGAATAACCCTTCCGACGCTCCCGCTGACGACTTCCTCGAACAAATCCTCGGCCTCCCGACCTTCGCTTCCGGCGACTCTGGCCTGGCCCCTGCCGATGTCGGCCTGGCCGGCACGGCTTCGCCGGCTCCTATGATGCTGCAGCTCAACTCCGCCGACGCCAACCCTCACCTCGCCGGCGCCGGCGCGGCCTTCCACGCGCCGGTGTATCAGTTAGGGTTGAGCTTAGACCAAGGCAAAGGAGGGTTCATGAAGCCGGAGGAAGCCTCTGCTAGCGGAAAGCGCTTTCGCGACGACGTCGTTGATGGTAGAGCTAAGAATGTTTTTCATGGGCAACCCATGCCTAGTACTATGCCTGCTGCTCCTCACCCTCCAGCAATTCGTCCTAGGGTGAGGGCAAGAAGAGGACAGGCTACAGATCCACACAGTATAGCTGAACGGTTACGCAGAGAAAGAATAGCAGAAAGAATCAGGGCATTGCAAGAACTGGTTCCAAGTGTCAACAAGACAGATAGAGCTGCCATGTTAGATGAAATTGTGGATTATGTCAAGTTCTTGAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGTGGAGCCGGTGCAGTGGCACCACTGGTAACTGACATCCCATTATCATCAGTCGAGGAAGAAGGTGGTGAAGGTGCGAGAAACCAACCAGCTTGGGACAAGTGGTCAAATGATGGCACAGAAAGACAGGTAGCCAAGCTTATGGAAGAAAATGTTGGTGCTGCCATGCAGTTTCTTCAATCAAAGGCGCTCTGCATCATGCCCATCTCACTGGCATCGGCAATATACCAGTCACAACCACCGGACACTTCCAGTATAGTCAAACCTGAAACTAATCCTCCTTCATAG 885 0.5345 MANNPSDAPADDFLEQILGLPTFASGDSGLAPADVGLAGTASPAPMMLQLNSADANPHLAGAGAAFHAPVYQLGLSLDQGKGGFMKPEEASASGKRFRDDVVDGRAKNVFHGQPMPSTMPAAPHPPAIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGGEGARNQPAWDKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPPDTSSIVKPETNPPS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1272 294 SMART finulus 144 193 IPR011598 GO:0046983
Ssu4g1272 294 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 7 283 - -
Ssu4g1272 294 Gene3D - 133 195 IPR036638 GO:0046983
Ssu4g1272 294 Pfam Helix-loop-helix DNA-binding domain 143 187 IPR011598 GO:0046983
Ssu4g1272 294 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 197 IPR036638 GO:0046983
Ssu4g1272 294 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 283 - -
Ssu4g1272 294 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 187 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1272 Ssu-Chr4 20711213 20714661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1272 66 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 81.702 4.67e-122 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu4g1272 HLH 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1272 - - gmx:100797789 516.538