Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1270 ATGGGGAGCTACGAAGCTGAGCTGAATCTTAAGGCCACAGAGTTGAGGTTGGGATTGCCCGGGAGTGATGAGCCTGAGAAACGTTCATGCAGTGGCTCTGTTGTTAGGAGCAACAAGAGATCTTCACCAGAATCCAGTGTGGAAGAGTCCAGGTGTAAGAGCAACGTTAATTCTGATGGTTCTGATTCCACAACCACAAGTGATCATGACCAAGACAGTGTCCAACCTACAAAGGTACAAGTAGTGGGGTGGCCACCGATTAGATCTTTCAGGAAGAATAGTTTACAACAGAAGAAGGTGGAGCAGGGTGATGAAACTGGAATGTACGTGAAAGTGAGCATGGCTGGTGCACCTTACTTGAGGAAGATAGATCTCAAGGTTTACAAGAGCTACCCAGAACTCCTCATGGCATTGCAAAATTTGTTCAAGTGCACTTTTGGTGAATATTCAGAAAGGGAAGGCTACAATGGATCTGAATACGCTCCTACTTATGAAGACAAGGATGGTGACTGGATGCTGGTTGGAGATGTTCCATGGAAGtaa 543 0.4586 MGSYEAELNLKATELRLGLPGSDEPEKRSCSGSVVRSNKRSSPESSVEESRCKSNVNSDGSDSTTTSDHDQDSVQPTKVQVVGWPPIRSFRKNSLQQKKVEQGDETGMYVKVSMAGAPYLRKIDLKVYKSYPELLMALQNLFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWK 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1270 180 ProSiteProfiles PB1 domain profile. 107 180 IPR000270 GO:0005515
Ssu4g1270 180 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 180 IPR003311 GO:0005634|GO:0006355
Ssu4g1270 180 Gene3D - 101 180 - -
Ssu4g1270 180 MobiDBLite consensus disorder prediction 17 79 - -
Ssu4g1270 180 Pfam AUX/IAA family 13 180 IPR033389 -
Ssu4g1270 180 PANTHER AUXIN-RESPONSIVE PROTEIN 4 180 - -
Ssu4g1270 180 SUPERFAMILY CAD & PB1 domains 103 180 - -
Ssu4g1270 180 MobiDBLite consensus disorder prediction 48 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1270 Ssu-Chr4 20693741 20694518 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1270 98 179 B3 DNA Binding Superfamily AT2G46530 36.585 9.67e-09 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ssu4g1270 AUX_IAA 1.5e-43 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1270 K14484 - gmx:100792134 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1270 4 20693741 20694518 Ssu7g2172 7 42684565 42685540 PCT