Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1269 ATGGAGGTTGGcctgaagaaggagaagatggGGTTTGAGGAAACTGAGCTAAGGCTTGGATTGCCTGGAAACGGAGCCTCGGGCACTGAAGAAGTGGTGAGGAAGAGAGGATTCTCCGAGACTGAAACTGATGAGACTGCCGCAGTGGATTTGATGCTTAATCTATCTTCCAAGGAAGCAACTACTGGGGCAGATCCAAGTGATAAGCACAAGACTTTACCTAAGGAGAAGACCCTTCTGCCTGCAGATCCTGCTAAGCCTCCAGCCAAGGCGCAGGTGGTGGGTTGGCCACCTGTGCGGTCCTTCCGGAAGAACATGTTAGCTGTGCAAAAGAGCGTTGGAGAGGAGAGCGAGAAGAACAGCAGCCCTAATGCAAGCTTTGTGAAAGTTAGCATGGATGGAGCACCTTACCTCCGCAAAGTGGACTTGAAGATGTATAAGAGTTACCGAGAGCTCTCTGATTCTTTGGGCAAAATGTTCAGCTCCTTCACCATTGGCAATTGCGAATCCCAAggaatgaaggatttcatgaaTGAGAGCAAGCTAATGGATCTTTTGAACAGCTCTGATTATGTCCCAACCTATGAGGACAAGGATGGTGACTGGATGCTTGTCGGTGATGTCCCATGGGAGATGTTTGTTGAATCATGCAAGCGTTTACGCATCATGAAAGGAAAGGAGGCTATTGGTCTTGGTCTTGcACCAAGAGCCATGGCAAAATGCAAGAACAGGAGCTAG 738 0.4634 MEVGLKKEKMGFEETELRLGLPGNGASGTEEVVRKRGFSETETDETAAVDLMLNLSSKEATTGADPSDKHKTLPKEKTLLPADPAKPPAKAQVVGWPPVRSFRKNMLAVQKSVGEESEKNSSPNASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTIGNCESQGMKDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLGLAPRAMAKCKNRS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1269 245 MobiDBLite consensus disorder prediction 18 93 - -
Ssu4g1269 245 ProSiteProfiles PB1 domain profile. 125 225 IPR000270 GO:0005515
Ssu4g1269 245 MobiDBLite consensus disorder prediction 63 77 - -
Ssu4g1269 245 PANTHER AUXIN-INDUCED PROTEIN AUX28 7 236 - -
Ssu4g1269 245 Pfam AUX/IAA family 14 232 IPR033389 -
Ssu4g1269 245 Gene3D - 119 236 - -
Ssu4g1269 245 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 236 IPR003311 GO:0005634|GO:0006355
Ssu4g1269 245 SUPERFAMILY CAD & PB1 domains 116 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1269 Ssu-Chr4 20672094 20675809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1269 115 228 B3 DNA Binding Superfamily AT4G23980 34.211 3.76e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ssu4g1269 AUX_IAA 6.1e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1269 K14484 - gmx:100810013 425.631