Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1263 ATGGCTCTTGCTGGCTCTGTGGTTGAGCTTCAAGCTtcttcaataataaagaaaactgcTGTTTCCAGAAGTTGGATTCTGCTGGACCATGATGGCACAGGCACTGTACTGGATGCGGATAAGTATGCTATTATGCGCCTTGTTAAAATTCACGCAAGAGATCTTCGGATTCTGGACCCTCTCCTATCTTACCCTTCCACCATTTTGGGCAGAGAAAAAGTCATTGTTCTCAATTTAGAGCACATTAAAGCTATTATCACCGCGGATGAGGTGTTGCTAAGAGACCCAACGGATGATAACGTGGTGCCAATTGTTGAGGAACTTCGACGACGGTTACCTAAAGTAAGTGCTGCTGGCCAAGGCCAAGGAGAAGAAGAGGCGTGTGCTCAAGATGGGGAAGGTGGAGAAGAAAATGAATTTCCATTTGAGATTCGGGCCTTGGAAGTTTTATTAGAGGCAATTTGTAGTTTCCTTGACGCACGAACGAGAGAGTTAGAGACTGCGGCTTATCCAGCTTTGGACGAATTGACCTCTAAGATCAGCAGTCGTAATTTGGATAGAGTGCGAAAATTGAAATGTGCAATGACGAGGTTGACAAATCGAGTTCAAAAGATTAGAGATGAACTAGAAAACCTacttgatgatgatgacgacATGGCTGATCTTTACTTATCAAGAAAGTTGGCTGTTTCATCCTCTCCCACAAGTAGCTCTGATGCTCCCTACTGGCTTTATGGGTCTCCAAATACAGGTTCAAGAATACACAGATCAAGCAGAGCAAGTGGAACAACAGTTCAAAGGGAGAATGATGTTGAGGAGCTAGAAATGTTACTTGAGGCTTACTTCATGCAAATTGACggcacattaaataaattggcCACATTGCGAGAATATATCGACGACACAGAAGATTACATCAACATACAGCTTGACAATTACCGAAATCAACTGATCCAGCTAGAGCTCTTCATTAGTGCCGGGACTGTCTGTATGTCCTTATATTCATTGGTCGCTGCAATATTTGGCATGAACATACCATATGCATGGAAAGCACCAGGCCAcgagtatatttttaaatgggtgGTGATCTTTGCGGGAATGGTTTGTGCGTCATTGTTTATATCCATAGTAACTTATGCCCGACGCAAAGGCCTTGTTTGGTCTTGA 1167 0.407 MALAGSVVELQASSIIKKTAVSRSWILLDHDGTGTVLDADKYAIMRLVKIHARDLRILDPLLSYPSTILGREKVIVLNLEHIKAIITADEVLLRDPTDDNVVPIVEELRRRLPKVSAAGQGQGEEEACAQDGEGGEENEFPFEIRALEVLLEAICSFLDARTRELETAAYPALDELTSKISSRNLDRVRKLKCAMTRLTNRVQKIRDELENLLDDDDDMADLYLSRKLAVSSSPTSSSDAPYWLYGSPNTGSRIHRSSRASGTTVQRENDVEELEMLLEAYFMQIDGTLNKLATLREYIDDTEDYINIQLDNYRNQLIQLELFISAGTVCMSLYSLVAAIFGMNIPYAWKAPGHEYIFKWVVIFAGMVCASLFISIVTYARRKGLVWS 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1263 388 CDD Mrs2_Mfm1p-like 25 385 IPR039204 -
Ssu4g1263 388 Pfam CorA-like Mg2+ transporter protein 273 376 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Ssu4g1263 388 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 8 386 IPR039204 -
Ssu4g1263 388 Coils Coil 188 215 - -
Ssu4g1263 388 Gene3D - 8 96 - -
Ssu4g1263 388 Gene3D Magnesium transport protein CorA, transmembrane region 103 317 - -
Ssu4g1263 388 MobiDBLite consensus disorder prediction 115 136 - -
Ssu4g1263 388 PANTHER MAGNESIUM TRANSPORTER MRS2-LIKE PROTEIN 8 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1263 Ssu-Chr4 20553064 20556301 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1263 1 361 MRS2 Gene Family AT5G64560 72.011 8.87e-163 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1263 K16075 - gmx:100799368 684.871