Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1262 ATGCAGGGAGCGAGTGTGAGTGTGGTCCGCACGGGCGAGGAGGGAGCGTCGGCGAGAAGCATGTCGAATCAGGTGGTGCGCGTGCGGAGGGACACGATTGCGGCATGCATGACTTGCCCACTCTGCAACAAGTTGTTCAGAGAAGCCACAACCATATCCGAATGTCTCCACACGTTTTGCAGGAAGTGCATTTTTGAGAAGATTACGGATGAGGAATTAGAATGCTGTCCAATATGCAACATTGATTTGGGTTGTCTTCCTGCCGAGAAACTGAGGCCAGACCACAGTTTGCAAGATGTAAGGGCCAAAGTTTTCCCCATAAAGGGAAGAAAGGTGAAGGCGCCTGAAGTTGTCACCTCAGTATCATTACCGGCTAGGAGAAAAGAGAGATCTCTTTCATCTCTGGTGGTCAGCACTCCAAGGGTATCTACACAGGCAACCATGACAGGAAGAAGAACAAAACCTACAAGAAAGGCTAGTAGTCTACGGTCCACTAGTTTTTCCATTGAAAAGCCCATTAAAAAGGAGGAAGAATTACTGGAAGATCGTCCTGAGAGTTCAAGCTCACCTGACACTTCAAATAAGTTTGCTCAGAATTCTGGACAGCGTATGTCCCCTTGTGAGGGTAGTCAATCCATACCCAATAAAGGATCAGAGAATGGTGCCGAACCATGGGATGCAAAATTGGATCTTTGGAAACCTTTGAATTGTTTAGTAGAGGTCGCAAGTAGGAGTAAATCTTTCAAGTCTAATGTGCAAGGGTCTGATGCTAAATTAGAAACCGTTCAAGTAAATGAGAGTGACTCTCAAGTGCAGAAAACCAAAAGTAAGGAAAATAAACGTAAGGCAAAAGTTGAGGATGAAAAGATTAGCCCATATCCTGTCTCTTCAGATACAGCAAAACCCAATAAATTGCGCCGAATACGCAAGAAAAAGGAGCCTGCTTCTGGAGAATCAGGCATATCACCCCAAGCTGTGCTGGACTCTGCCAGCAATAGACTCTTAAGGACCGGTCCAATTTGGTTCTCCTTAGTAGCCTCTGAAAACCAGGAAGGAGATGCACCCTTGCCCCAAATTCCTGTGAGTTATGTGAGAATAAAGGATAGTAGCGTACCAGTCTCATTCATCCAAAAATACCTAATGAAGAAACTAGATTTGACCAGTGAAACAGAGGTTGAGATTAAATGTATGGGACAACCAGTGCTCCCTACACTGCGGCTATATAATTTGGTTGAGTTGTGGCTGGATACGGCGTCCACGTCACAGCGAATTCCAGCAACTATTGGGTCCTCGGCAAAGGATTTTGTCATGGTCCTGGCTTATGCTCGGAAGGTTCCACACCCTTGA 1347 0.4588 MQGASVSVVRTGEEGASARSMSNQVVRVRRDTIAACMTCPLCNKLFREATTISECLHTFCRKCIFEKITDEELECCPICNIDLGCLPAEKLRPDHSLQDVRAKVFPIKGRKVKAPEVVTSVSLPARRKERSLSSLVVSTPRVSTQATMTGRRTKPTRKASSLRSTSFSIEKPIKKEEELLEDRPESSSSPDTSNKFAQNSGQRMSPCEGSQSIPNKGSENGAEPWDAKLDLWKPLNCLVEVASRSKSFKSNVQGSDAKLETVQVNESDSQVQKTKSKENKRKAKVEDEKISPYPVSSDTAKPNKLRRIRKKKEPASGESGISPQAVLDSASNRLLRTGPIWFSLVASENQEGDAPLPQIPVSYVRIKDSSVPVSFIQKYLMKKLDLTSETEVEIKCMGQPVLPTLRLYNLVELWLDTASTSQRIPATIGSSAKDFVMVLAYARKVPHP 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1262 448 MobiDBLite consensus disorder prediction 246 270 - -
Ssu4g1262 448 MobiDBLite consensus disorder prediction 132 224 - -
Ssu4g1262 448 ProSitePatterns Zinc finger RING-type signature. 55 64 IPR017907 -
Ssu4g1262 448 MobiDBLite consensus disorder prediction 132 168 - -
Ssu4g1262 448 Pfam Zinc finger, C3HC4 type (RING finger) 39 79 - -
Ssu4g1262 448 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 22 444 IPR044807 GO:0004842
Ssu4g1262 448 MobiDBLite consensus disorder prediction 246 323 - -
Ssu4g1262 448 SMART ring_2 39 79 IPR001841 -
Ssu4g1262 448 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 22 444 - -
Ssu4g1262 448 SUPERFAMILY RING/U-box 34 103 - -
Ssu4g1262 448 ProSiteProfiles Zinc finger RING-type profile. 39 80 IPR001841 -
Ssu4g1262 448 MobiDBLite consensus disorder prediction 186 218 - -
Ssu4g1262 448 MobiDBLite consensus disorder prediction 169 185 - -
Ssu4g1262 448 MobiDBLite consensus disorder prediction 271 291 - -
Ssu4g1262 448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 130 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1262 Ssu-Chr4 20542827 20547948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1262 22 367 C3H Transcription Factor Family AT2G30580 53.314 7.23e-114 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1262 K16277 - gmx:100815540 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1262 4 20542827 20547948 Ssu7g2181 7 42799727 42804613 PCT