Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1259 ATGCCATTGCTCAAAGAAGAGGTGAAAAGATCAATTAAGGTGCTTGCTACCAGCAACAAGCTTGCAGATATCCCTCCCGATGGTTATTCATGGAGGAAGTACGGGCAGAAAGCAATCAAGGGATCACCTCACCCTATGGGATACTATAAGTGCAGCAGCATGAGAGGGTGCCCTGCTAGGAAGCATGTTGAGAGGTGCTTGGAAGAGCCTTCAATGCTAATTGTTACCTATGAAGGCGACCAAAACCACCCCAAGTTACCAACACAATCTGCAAATGCTtga 282 0.4645 MPLLKEEVKRSIKVLATSNKLADIPPDGYSWRKYGQKAIKGSPHPMGYYKCSSMRGCPARKHVERCLEEPSMLIVTYEGDQNHPKLPTQSANA 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1259 93 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 6 91 - -
Ssu4g1259 93 SUPERFAMILY WRKY DNA-binding domain 23 85 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu4g1259 93 SMART WRKY_cls 25 85 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu4g1259 93 Gene3D WRKY domain 9 87 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu4g1259 93 Pfam WRKY DNA -binding domain 27 83 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu4g1259 93 ProSiteProfiles WRKY domain profile. 20 86 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu4g1259 93 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 6 91 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1259 Ssu-Chr4 20483772 20484891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1259 5 90 WRKY Transcription Factor Family AT2G30590 79.070 3.33e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu4g1259 WRKY 1.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1259 - - gmx:100792310 169.088