Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1258 atgaaaagtgattCCAAATTTAGAAAACAGAAGATAATGGCACAAGAACGCAAACCTGTCGGCGAAACCCCAGACTGTCCCCACTCCTATTTATATCCAAACCCCCCACCCGCATTCCAACACCATTCTCACCCACTCCCACTCTGCTCTTCACCAATGCCTGCTCACGCGCTTCCAATTCTCAAACGCTCACCGCCGCCGCCGTCGAAGCCCAATCCCAAGCCCAAGGAGGCCCATTTCAGGGGCGTCCGCAAGCGTCCCTGGGGCCGCTTCGCCGCCGAGATCCGCGATCCCTGGAGAAAGACCCGAAAGTGGCTTGGCACCTTCGACACCGCCGAGGAGGCAGCCAGGGCCTACGACACCGCCGCCAGAACCCTCCGTGGGCCCAAGGCCAAGACCAACTTCGCATACGTCGTTGCTCCCGTCCTCCATCTCCCTCCCGCGGTGCTCGCTGCTCCCGAAGCCCAGGCCCAGGTCCGAGCCCAAGACCAACTTGCCAGACAGGTCGAGTTCTGGGCCCCTCCGTTGTACTTCGCGACGGATGTAGCTTCCAGCGCGCCGGTTAGGTCGGAGTACAAGGGTTACAAGTTGGAGAATATTGCGGATTTTGTGGTGAGCaaggaggagaaaaagaagccGTTCTTGTTCGACCTTAACCTGCCGGCGCCCCTCTTCTGA 678 0.5723 MKSDSKFRKQKIMAQERKPVGETPDCPHSYLYPNPPPAFQHHSHPLPLCSSPMPAHALPILKRSPPPPSKPNPKPKEAHFRGVRKRPWGRFAAEIRDPWRKTRKWLGTFDTAEEAARAYDTAARTLRGPKAKTNFAYVVAPVLHLPPAVLAAPEAQAQVRAQDQLARQVEFWAPPLYFATDVASSAPVRSEYKGYKLENIADFVVSKEEKKKPFLFDLNLPAPLF 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1258 225 Gene3D AP2/ERF domain 78 138 IPR036955 GO:0003700|GO:0006355
Ssu4g1258 225 MobiDBLite consensus disorder prediction 57 81 - -
Ssu4g1258 225 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 71 161 - -
Ssu4g1258 225 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Ssu4g1258 225 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Ssu4g1258 225 MobiDBLite consensus disorder prediction 1 23 - -
Ssu4g1258 225 MobiDBLite consensus disorder prediction 1 45 - -
Ssu4g1258 225 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 71 161 - -
Ssu4g1258 225 SMART rav1_2 79 142 IPR001471 GO:0003700|GO:0006355
Ssu4g1258 225 Pfam AP2 domain 79 128 IPR001471 GO:0003700|GO:0006355
Ssu4g1258 225 MobiDBLite consensus disorder prediction 59 73 - -
Ssu4g1258 225 SUPERFAMILY DNA-binding domain 79 137 IPR016177 GO:0003677
Ssu4g1258 225 CDD AP2 78 138 IPR001471 GO:0003700|GO:0006355
Ssu4g1258 225 ProSiteProfiles AP2/ERF domain profile. 79 136 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1258 Ssu-Chr4 20469400 20470077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1258 76 135 AP2-EREBP Transcription Factor Family AT5G44210 86.667 1.69e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu4g1258 AP2 2.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1258 K09286 - gmx:100816599 246.899