Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1256 ATGAGTGTCAATGACAAATTTGGTGACAGGGAGTCTGAAAAAGTTTTGGTCCAAACAAAGAATGGGGATAATAGTAGCCAATCAGGCTCATTTAATCATTTAGAGAAAGATGCTTATGGCTCTCAATCAGGTGAAGAAAGCGGTGTTAAGAGCATTTCTGCTTACAGAGGACAAGCTGAAAAGGAATTCAGGGTGGAAGTTGAGGCTATTAGTCATGTGCGGCATAAGAACTTGGTTCGACTTTTAGGCTATTGCATTGAAGGCACTCATAGGCTGGCATACTTGCACGAGGCAATTGAGCCAAAAGTTGTGCATCGAGATATTAAGTCGAGCAATATTCTAATTGATGAGGACTTTAATGCCAAAAGACATATGGTCAAGGGTACTGTTTTTGCCACAGATGCTAGTGTAGCTTATGTTGACATCACCGTGAAGACCACAATTTACTTGGCCCTTCAACAGGCGCgcatccacaaaaataaaagtgtggAAGAAGCAGGCATAACTCATTGCTTGAGAGAGGAATTTGTGATCGTTGGTCAAAATGAAGCTGATGATTTGTATGGTAATGTATTTAAGACAAGCATTTTGGGAACTGGTGTGATTGTGTCCACAGACCCGGAAGTGAACAAGGTGATTCTGCAGAACCAGGGGAACATCTTTGTTCCTGCTTATCCAAAATTAGATAGAGAATTAATGGGAGGATACTCTATACGCTAA 720 0.3986 MSVNDKFGDRESEKVLVQTKNGDNSSQSGSFNHLEKDAYGSQSGEESGVKSISAYRGQAEKEFRVEVEAISHVRHKNLVRLLGYCIEGTHRLAYLHEAIEPKVVHRDIKSSNILIDEDFNAKRHMVKGTVFATDASVAYVDITVKTTIYLALQQARIHKNKSVEEAGITHCLREEFVIVGQNEADDLYGNVFKTSILGTGVIVSTDPEVNKVILQNQGNIFVPAYPKLDRELMGGYSIR 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1256 239 ProSiteProfiles Protein kinase domain profile. 1 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1256 239 PANTHER RECEPTOR-LIKE KINASE PLANT 57 92 - -
Ssu4g1256 239 PANTHER OS01G0323000 PROTEIN 57 92 - -
Ssu4g1256 239 ProSitePatterns Serine/Threonine protein kinases active-site signature. 103 115 IPR008271 GO:0004672|GO:0006468
Ssu4g1256 239 MobiDBLite consensus disorder prediction 1 17 - -
Ssu4g1256 239 MobiDBLite consensus disorder prediction 18 37 - -
Ssu4g1256 239 Gene3D Phosphorylase Kinase; domain 1 11 92 - -
Ssu4g1256 239 PANTHER OS01G0323000 PROTEIN 92 123 - -
Ssu4g1256 239 Gene3D Transferase(Phosphotransferase) domain 1 93 124 - -
Ssu4g1256 239 PANTHER RECEPTOR-LIKE KINASE PLANT 1 56 - -
Ssu4g1256 239 PANTHER RECEPTOR-LIKE KINASE PLANT 92 123 - -
Ssu4g1256 239 MobiDBLite consensus disorder prediction 1 45 - -
Ssu4g1256 239 Gene3D Cytochrome P450 167 239 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g1256 239 SUPERFAMILY Protein kinase-like (PK-like) 38 122 IPR011009 -
Ssu4g1256 239 PANTHER OS01G0323000 PROTEIN 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1256 Ssu-Chr4 20409375 20412201 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1256 42 122 Trihelix Transcription Factor Family AT1G23540 36.667 3.16e-18 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Ssu4g1256 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1256 - - gmx:100785337 119.398