Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1251 ATGGAAGGAAACTATCTGAGCAGAAACTCTCATAAAGGGGACAGGTTTGGCTTTGAGGAGCATTCATGGGGAAGTTCATGGCCTGCTAGAAACTATGCTTGTAGCTTTTGCAAGAGAGAGTTCAAGTCTGCTCAAGCCTTGGGTGGCCACATGAATGTTCATAGAAGGGATAGGGCAAGATTGAGATCTTCCTTaccctcatcatcatcatgggTTTCTGAATGTCCTAAACCTAACCCTAGCATTAAGCCTAACCCAACTCATCTTTCACCCTCCTCTTCTTCATCATGCTTATCCAAGAACCTTTTGCATTGTGCGCATATTTCTCCACTTTATAGCCCTTCTTTGACTTTGCCTTCTTCACTGACCCCAGCTTCTCCCAGTGGAGATAAGAAACCAAGACTCGCATCTTCCCAGCTTCTTCCTCTTTCGGTTCCTCAAAGCAGCAGGGACATTAAGATGATCAGTAAGAACACAGGGAGTGGTTTAGGAGTTGAAGAAGTACAGGGTTGTGCAATGGGGGAGGAACACAAGGTTTTCAAGAGTAGTGAGCATAACATCAAGCTGGAGTTGGGAATAGGGTTGCTTAAACAGCCAGAGAAGTTAGATTTGGAGCTACGATTGGGGCACTGCTAG 636 0.4387 MEGNYLSRNSHKGDRFGFEEHSWGSSWPARNYACSFCKREFKSAQALGGHMNVHRRDRARLRSSLPSSSSWVSECPKPNPSIKPNPTHLSPSSSSSCLSKNLLHCAHISPLYSPSLTLPSSLTPASPSGDKKPRLASSQLLPLSVPQSSRDIKMISKNTGSGLGVEEVQGCAMGEEHKVFKSSEHNIKLELGIGLLKQPEKLDLELRLGHC 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1251 211 Pfam C2H2-type zinc finger 32 56 - -
Ssu4g1251 211 SMART c2h2final6 32 54 IPR013087 -
Ssu4g1251 211 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Ssu4g1251 211 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Ssu4g1251 211 SUPERFAMILY beta-beta-alpha zinc fingers 29 58 IPR036236 -
Ssu4g1251 211 Gene3D Classic Zinc Finger 21 77 - -
Ssu4g1251 211 PANTHER TRANSCRIPTIONAL REGULATOR SUPERMAN 19 210 - -
Ssu4g1251 211 MobiDBLite consensus disorder prediction 58 93 - -
Ssu4g1251 211 PANTHER OS07G0101800 PROTEIN 19 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1251 Ssu-Chr4 20083773 20084408 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1251 27 210 C2H2 Transcription Factor Family AT2G42410 38.660 1.35e-23 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu4g1251 zf-C2H2_6 6.9e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1251 - - gmx:102660083 266.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1251 4 20083773 20084408 Ssu7g2201 7 43186581 43192999 PCT