Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1250 ATGGACTTAAACTACCCAGAAGGGTACTGTTCCAAGGGCTCCAGCGAAGAAACTGAACGATCATCGGAGCAGAATGATGATGTGATGGGAACTGGGAGATCCTACGAGTGCATCTTTTGCAAGAGAGGCTTCACCACAGCACAAGCTTTAGGTGGACACATGAACATACACAGGAAAGAAAGAGCCAACAAGACCAAACCCAGTTTCCCTCATCCTTCGAGTTCAAACAAAGATGGTGGCAACAGCTATGCAGATCTCGGGTTCTATTCACAAATTCCAAGCCATTCCACTGCTCCTGGGGTCGATGCTAATAGATACCGTGAAGTTTATTTTCCTGCCACTGCACCAAGTATTAGACCTTCCCGTGAGGTTTTGTGCGTACAAAACCAACGGGGTCACGTGTTTGCGCAAGATTGGAGGAACAGAAATTTGAGCTTGTATACTAATCCGTTGTGTTCTCATGAGGTTAAAGATAAGTTTGAAGACAGTGAAGAAAATGGTCTGGATTTGGAGCTGAGGCTTGGTCATCATCCATAG 537 0.4562 MDLNYPEGYCSKGSSEETERSSEQNDDVMGTGRSYECIFCKRGFTTAQALGGHMNIHRKERANKTKPSFPHPSSSNKDGGNSYADLGFYSQIPSHSTAPGVDANRYREVYFPATAPSIRPSREVLCVQNQRGHVFAQDWRNRNLSLYTNPLCSHEVKDKFEDSEENGLDLELRLGHHP 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1250 178 Pfam C2H2-type zinc finger 35 60 - -
Ssu4g1250 178 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
Ssu4g1250 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
Ssu4g1250 178 MobiDBLite consensus disorder prediction 67 86 - -
Ssu4g1250 178 SUPERFAMILY beta-beta-alpha zinc fingers 33 62 IPR036236 -
Ssu4g1250 178 MobiDBLite consensus disorder prediction 62 86 - -
Ssu4g1250 178 Gene3D Classic Zinc Finger 12 85 - -
Ssu4g1250 178 PANTHER TRANSCRIPTIONAL REGULATOR TAC1-LIKE 11 178 - -
Ssu4g1250 178 MobiDBLite consensus disorder prediction 1 28 - -
Ssu4g1250 178 PANTHER OS07G0101800 PROTEIN 11 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1250 Ssu-Chr4 20051769 20052305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1250 35 94 C2H2 Transcription Factor Family AT5G43540 53.226 9.80e-15 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1250 - - gmx:102664910 263.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1250 4 20051769 20052305 Ssu4g1250 4 20051769 20052305 ECH
Ssu4g1250 4 20051769 20052305 Ssu7g2202 7 43201474 43202067 PCT