Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1249 ATGAATGCTAGACGagaCAACCGTAACAATAGAGTTTCCCTTTTTGATGGTATCGAGGAGGGTGGCATCAGATCATCATCTCTTTACTCCTCTTCCCATGAAATTGATGAACACGATAATGAGCAGGCACTGGACGGATTGCAGGATAGAGTCAATCTGCTGAAAAGATTATCAGGTGATATAAATGAGGAGGTGGATAGCCATAACCGCATGCTGGATCGAATGGGGAATGATATGGATGCATCAAGAGGAGTCCTTTCGGGCACTATGGACAAATTTAAAATGGTATTCGAGACCAAATCCAGCCGGAGAATGTTTACGCTTGTAGCATCCTTTGTTGTGCTTTTTCTCATAATATACTACCTCACTAGGTAA 375 0.4213 MNARRDNRNNRVSLFDGIEEGGIRSSSLYSSSHEIDEHDNEQALDGLQDRVNLLKRLSGDINEEVDSHNRMLDRMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVLFLIIYYLTR 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1249 124 Gene3D - 42 105 - -
Ssu4g1249 124 PANTHER GOLGI SNARE BET1-RELATED 1 124 IPR039897 GO:0015031|GO:0030173
Ssu4g1249 124 SMART tSNARE_6 29 96 IPR000727 -
Ssu4g1249 124 PANTHER BET1-LIKE SNARE 1-1 1 124 - -
Ssu4g1249 124 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 34 96 IPR000727 -
Ssu4g1249 124 SUPERFAMILY SNARE fusion complex 28 96 - -
Ssu4g1249 124 CDD SNARE_Bet1 37 94 IPR039899 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1249 Ssu-Chr4 20037132 20040130 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1249 K08504 - gmx:100814836 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1249 4 20037132 20040130 Ssu4g1249 4 20037132 20040130 ECH
Ssu4g1249 4 20037132 20040130 Ssu7g3181 7 75328109 75332878 PCT
Ssu7g2203 7 43211718 43214318 Ssu4g1249 4 20037132 20040130 PCT