Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1246 ATGGCTTCTGCTAGTGGAAATGGTGGCTCCGGGTCTGGCTCTCCTTGCGGGGCATGCAAGTTCCTCAGGCGAAAGTGTGCAGCTGACTGCATCTTTGCACCTTACTTTTGCTCAGAACAAGGCCCTGCTAGATTTGCAGCCATCCACAAGGTGTTTGGCGCCAGCAACGTTTCCAAGTTGCTTTTGCATATACCAGCTCAGGATCGTTGTGAGGCCGTTGTCACAATCGCTTATGAGGCCCAGGCTCGTATCAGGGACCCTGTCTATGGCTGTGTCTCTCACATTTTTGCCTTACAGCAACAGGTGGCATGCTTGCAGGCACAGCTGATGCAAGTGAAGGCCCAGCTGGCTCAAAACCTGATGGAGTCCAGAAACATAGAGAATCATCAGTGGCCAGGGAATAACAGTGTTGCAGGACAACCAATGAACCATCCATTTTGTCCCACTTACATGAACCCTATATCTCCTCAGAGCTCTCTTGAGTCAGTTGATCACAGCAGCATCAATGATGGGATGGGCATGCAAGATATACAAAGCAGAGAGGACTTCCCAATGCAAGCTTCTTCTAAGGAAAGATCATACAACAACAATGACTTGGGGGAACTTCAAGAACTGGCACTTAGGATGATGAGGAACTGA 639 0.493 MASASGNGGSGSGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAQDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQLAQNLMESRNIENHQWPGNNSVAGQPMNHPFCPTYMNPISPQSSLESVDHSSINDGMGMQDIQSREDFPMQASSKERSYNNNDLGELQELALRMMRN 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1246 212 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 1 211 - -
Ssu4g1246 212 Coils Coil 95 115 - -
Ssu4g1246 212 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 211 - -
Ssu4g1246 212 ProSiteProfiles LOB domain profile. 14 116 IPR004883 -
Ssu4g1246 212 Pfam Lateral organ boundaries (LOB) domain 15 113 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1246 Ssu-Chr4 20012927 20014273 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1246 3 212 AS2 family AT2G42430 53.846 3.94e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu4g1246 LOB 1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1246 K13944 - gmx:100801508 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1246 4 20012927 20014273 Ssu4g1246 4 20012927 20014273 ECH
Ssu4g1246 4 20012927 20014273 Ssu7g2205 7 43266254 43267879 PCT