Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1244 ATGAGCTCTTTCACAACCTTCTGTATATCCACAAGGATCTTTCGAAATCCCCTAGCAGAAGCCAAGGCCAGCCCTTTCTGGGTTATAGGTGCTACCCATTTTGCAGCCATTCATAAGGTCTTTGGTGCAAGCAATGTCTCAAAGCTCCTTGCTCACCTCCCTGTGAGTGACCGTTGTGAAGCTGCAGTCACAATCTCTTATGAAGCTCAAGCTAGACTTCAGGATCCAATTTATGGCTGTGTTGCTCATATTTTTGCACTCCAACAACAGGTGGTGAATTTACAAGCACAGCTAGCTTATCTTAGGGAACAAGCAGGTCAGATCTATCTCAATGCCTCTGCCACTGAAAACCCTAATGAGAAGTACTTTGGAAAACCTACTACTTTCCCCCAAGATCTTCAAAGTTGGTTCCAGATGGAGAATTCCAACATGGCTTCACAATTTCTTCCTAACTTGTCCACCAATCCCTCAACACAGTATTATGGGAATACTAGTACTCCCGTGGACCCAAACCCAATTGGAAATTATGAAAATTCAGGAACCATAGAAGAAAGCATCTCATTTTCTAGCTTTGAAGAGAGTTGTAACTCCATGTCCTATGACATGCAAAGGCAGTGGACCTTTCATGAAGTGGATAACCTTCAGTAA 648 0.4321 MSSFTTFCISTRIFRNPLAEAKASPFWVIGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVAHIFALQQQVVNLQAQLAYLREQAGQIYLNASATENPNEKYFGKPTTFPQDLQSWFQMENSNMASQFLPNLSTNPSTQYYGNTSTPVDPNPIGNYENSGTIEESISFSSFEESCNSMSYDMQRQWTFHEVDNLQ 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1244 215 PANTHER LOB DOMAIN-CONTAINING PROTEIN 17-RELATED 30 214 - -
Ssu4g1244 215 Coils Coil 84 104 - -
Ssu4g1244 215 Pfam Lateral organ boundaries (LOB) domain 29 101 IPR004883 -
Ssu4g1244 215 ProSiteProfiles LOB domain profile. 1 105 IPR004883 -
Ssu4g1244 215 PANTHER LOB DOMAIN CONTAINING PROTEIN 30 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1244 Ssu-Chr4 19975584 19982136 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1244 8 130 AS2 family AT3G58190 61.719 3.12e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu4g1244 LOB 1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1244 K13945 K13944 gmx:100816960 317.775
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1244 4 19975584 19982136 Ssu4g1244 4 19975584 19982136 ECH
Ssu4g1244 4 19975584 19982136 Ssu7g2206 7 43304233 43305089 PCT