Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1242 ATGGGTACCAACAACTTGCACCAAGTACTCAGAAGCCTCTGTTTGAATACTCACTGGAACTACGCCATCTTTTGGAAGCTCAAACATCGTGCTCGAATGATCTTGACATGGGAGGACGCATACTATAACAATCCTGATGATTATGACTCTTCAGAAAACAAGTGTGGCCAGAAGACCTTGGAACACATTGGTTGTGGGAAATTTTCCCACAGCGCATTAGGGTTAGCTGTGGCTAAGATGTCATATCATGCATATTCATTAGGAGAAGGCATTGTTGGACAGGTAGCTGTTACTGGAAAACATAGGTGGATCTGTGCGGATAATCAAGTTATAGGTTCTGGCTTGTCTTTTGAGTTTGCTGATGGGTGGCAGTCTCAGTTTTCTGCTGGAATCAGGACTATTGCTGTTGTTGCTGTAGTCCCACTTGGCGTTGTTCAGCTTGGCTCTCTAAATAAAGTGATTGAAGATATGGAGTTTGTAACTCATATCAGAAATCTTTTTTTGTCTACTCAAAATTACTCAATAGGCCAATGTCCTAGTCAAATACAGGGTAGTTTGAAGAGTTCATCTCAGTTGGATATATTGAAGGAAAATTTGTCTTCAGATATTATGCCTACTTGCTTTTACGATACAGAGAAAAATATGAAGAGTGAAACAGTGGATGTTGTAATGCCCCTTCAATGTTCTGGGAAGAATTATACACCTCATTCTGCTTGTGAGAAAATGTATGATAATGTGGCCAAGCAAGAGGGGCCTGAATTTTACAGTGACGAAAGTTCCATTTTGATTCAGTCGATATCCAATATGATGAATGTGGAGTGTCAGGAATTTGAAGAGATGAAACCTCTATATGGGAGGAAGTGTGAAGGGGGAAGTAGTGGCTGCAAAGATACGATGTTGGAATCAGaaaaaaatgtcacatcattCTTAAACGATTTTGTTACAGATAATGCTAGCTTCAATGATTTAATATGTCAATCAGAAAAAGTCAGAGTTGATTCTGCATGTTTTCCTTCACTTTTTCTAGATACAGTGGTTTGTGAAAGTGATAAATTGCAATGTGTGGATATTAACCAAAAACAGGTGTTGAATTTCGCCCAACCTTCAGATGCAAATTCCCAACAACATACTGAAAAGTCAAAGTTTCATACTGAGCCTTGTTACAAGGATATCTCATACTTTCAAACTGAACCTTGTTACAAGGATATGTCGCACATGTTGAAGTTCCCTGCTGGCTGTGAGCTACATGAAGCACTTGGACCAGCTTTTTTGAAAGGGAGTAAATGTTTTGATTGGCTAGCACAGGTTAATCAAGATATGAAAACTGTTGAAATGTCAGATGAGATTAGCACTAGCCAATTGACTTCTGAATCTCGTCCAGAACATCTTTTGGAAGCAATGGTGGCCAACATTTGCCATAGTAATAATGATGTTAATAGTGAATTATCATTTTGTACATCAATGCAATCAGCAATGGCCTCTGGAAAAAATCACGAGGCCTCTATTCACAATGTGCATACTATTAATTCAGAAGGCTATTCAATAGATCAGCTCTCTCTTGTCAGAGAGGACAAACACCATTCTTTGAGTTCATCGTCAGGGATATGTGGTGTGATGTCCTCAAAAGGTGTTTCATCTACATTTCCTAGTTCAAGTAGTGGACAGCTTGAAAGGTCTTCTGAACCATCTAAAAACAGTAAAAAGAGGGCTAGGCCCGGGGAAAGTTGTAGGCCTCGGCCAAGGGACAGGCAACTGATCCAAGATCGTATTAAAGAGTTGAGAGAGCTGGTGCCAAATGGAGCTAAGTGCAGTATTGATTCATTGCTGGAGCGCGCAATAAAGCATATGCTCTTTCTCCAAAGCATAACTAAACATGCCGACAAGCTAACTGACTTTGCTGATACAAAGTCAAAGCTGCATCACATGGAAACAGACATTCCTGGATCCTCTAGTTATGAGCAGGGCTCAAGCTGGGCAATGGAGGTAGGGGGTCATCTGAAAGTTCATTCAATATTAGTGGAGAATCTTAGCAAGAATGGACAGATGCTTGTTGAGATGCTCTGTGAGGAGTGCAGCCATTTTCTTGAAATAGCAGAAGCCATAAGAAGTCTGGGCCTTGCCATTTTGAAGGGTGCGACAAAAGCTTATGGTGAGAAGATATGGATATGCTTTGTTGTTGAGGGTCAAAACAACCGAAATGTACACAGATTGGATATTTTGTGGCCGCTTGTTCAAATACTGCAATCAAAGAGCACGGTGTATTCACAATAA 2271 0.4016 MGTNNLHQVLRSLCLNTHWNYAIFWKLKHRARMILTWEDAYYNNPDDYDSSENKCGQKTLEHIGCGKFSHSALGLAVAKMSYHAYSLGEGIVGQVAVTGKHRWICADNQVIGSGLSFEFADGWQSQFSAGIRTIAVVAVVPLGVVQLGSLNKVIEDMEFVTHIRNLFLSTQNYSIGQCPSQIQGSLKSSSQLDILKENLSSDIMPTCFYDTEKNMKSETVDVVMPLQCSGKNYTPHSACEKMYDNVAKQEGPEFYSDESSILIQSISNMMNVECQEFEEMKPLYGRKCEGGSSGCKDTMLESEKNVTSFLNDFVTDNASFNDLICQSEKVRVDSACFPSLFLDTVVCESDKLQCVDINQKQVLNFAQPSDANSQQHTEKSKFHTEPCYKDISYFQTEPCYKDMSHMLKFPAGCELHEALGPAFLKGSKCFDWLAQVNQDMKTVEMSDEISTSQLTSESRPEHLLEAMVANICHSNNDVNSELSFCTSMQSAMASGKNHEASIHNVHTINSEGYSIDQLSLVREDKHHSLSSSSGICGVMSSKGVSSTFPSSSSGQLERSSEPSKNSKKRARPGESCRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLERAIKHMLFLQSITKHADKLTDFADTKSKLHHMETDIPGSSSYEQGSSWAMEVGGHLKVHSILVENLSKNGQMLVEMLCEECSHFLEIAEAIRSLGLAILKGATKAYGEKIWICFVVEGQNNRNVHRLDILWPLVQILQSKSTVYSQ 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1242 756 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 6 167 IPR025610 -
Ssu4g1242 756 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 583 625 IPR036638 GO:0046983
Ssu4g1242 756 PANTHER BHLH TRANSCRIPTION FACTOR-LIKE PROTEIN 4 756 - -
Ssu4g1242 756 MobiDBLite consensus disorder prediction 546 560 - -
Ssu4g1242 756 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 570 619 IPR011598 GO:0046983
Ssu4g1242 756 MobiDBLite consensus disorder prediction 561 585 - -
Ssu4g1242 756 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 4 756 IPR043561 GO:0003700|GO:0006355
Ssu4g1242 756 MobiDBLite consensus disorder prediction 546 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1242 Ssu-Chr4 19912306 19919067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1242 1 751 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 40.177 2.54e-153 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1242 - - ccaj:109796613 1333.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1242 4 19912306 19919067 Ssu4g1242 4 19912306 19919067 ECH
Ssu4g1242 4 19912306 19919067 Ssu7g2210 7 43379651 43386095 PCT