Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1239 ATGGCACTGAACCACAAGCCCTCTTACAAGCTTGTATATCAAGCTCCCCCACCCATCAAAACCCAGGCCAACACAATCCATCACACACCACATCCTGCTTCAGATTCTGCATCTGCTTTACCCATACTTGCCATCATTGTGCCCAGCATCTTTGTCACTGCTTTCATGCTCATCAGCTACTTAACTCTTGTGACCAAATGCTGCTCAAACTGGCACCAACTTAATAACCCATTGAGATGGATTTCCACCCTACGAGCCCCACAGCATGAAAATCATGACCCCTTCACAGCACTCTCTCCCAGGATGTGGAACCAAGGACTTGATGAATCTGCCATCAGAGAAATCCCAACACTTGAATTCACCAACGGAGATGTTGAGAAGAATCAAAGCGTGTGTGgatgtgtggtttgtttgactGAATTTCAAGAACATGATATGCTAAAGGTTCTACCAAATTGCAAGCACGCCTTTCACGTTCATTGCATTGACATTTGGCTTCAAACCAATGCCAACTGCCCTCTTTGCAGATCAAGCATTTCAGGCAACACACACTGTCCACTGGATCATGTCATAGCTCCAAACTCTTCTCCTCAGGATTCTCAATTGCTCTCTTACATGGGCAGTGATGAAGATTTTGTGGTGATTGAACTTGGGGGAGAACATGGGGTGACTCTGCCCCAGATGCAGCAAGAAAGAAGTGACACAAGGGGAAGAATAGTAGAGAGTAGAAGTCACTCTTCAAGGAAGTGTCACCATGTTTCCATCATGGGGGATGAGTGTATTCATGTTGGGAAGAAAGATGAGCAGTTTTCTATTCAGCCTATTCGAAGATCTTTCTCAATGGATTCAGCAAATGATAGGCAAGTTTACTTGGATTTTCAAGCCATCATACAACAAAATAATGGAGGCTAG 912 0.4364 MALNHKPSYKLVYQAPPPIKTQANTIHHTPHPASDSASALPILAIIVPSIFVTAFMLISYLTLVTKCCSNWHQLNNPLRWISTLRAPQHENHDPFTALSPRMWNQGLDESAIREIPTLEFTNGDVEKNQSVCGCVVCLTEFQEHDMLKVLPNCKHAFHVHCIDIWLQTNANCPLCRSSISGNTHCPLDHVIAPNSSPQDSQLLSYMGSDEDFVVIELGGEHGVTLPQMQQERSDTRGRIVESRSHSSRKCHHVSIMGDECIHVGKKDEQFSIQPIRRSFSMDSANDRQVYLDFQAIIQQNNGG 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1239 303 PANTHER RING-H2 FINGER PROTEIN ATL16 1 301 IPR044600 GO:0016567|GO:0016740
Ssu4g1239 303 SMART ring_2 134 175 IPR001841 -
Ssu4g1239 303 CDD RING-H2_PA-TM-RING 134 176 - -
Ssu4g1239 303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 182 IPR013083 -
Ssu4g1239 303 SUPERFAMILY RING/U-box 112 181 - -
Ssu4g1239 303 Pfam Ring finger domain 134 176 IPR001841 -
Ssu4g1239 303 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Ssu4g1239 303 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1239 Ssu-Chr4 19869360 19870271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1239 33 301 C3H Transcription Factor Family AT1G04360 43.182 1.47e-67 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1239 K19041 - gmx:100809883 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1239 4 19869360 19870271 Ssu4g1239 4 19869360 19870271 ECH
Ssu4g1239 4 19869360 19870271 Ssu7g3192 7 75639404 75640453 PCT
Ssu7g2215 7 43449216 43450262 Ssu4g1239 4 19869360 19870271 PCT